Pairwise Alignments

Query, 188 a.a., topoisomerase DNA-binding C4 zinc finger domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 900 a.a., DNA topoisomerase TopA from Phaeobacter inhibens DSM 17395

 Score = 60.8 bits (146), Expect = 7e-14
 Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 6/84 (7%)

Query: 8   QLFSAHEHALEKEYELCPECGS-ELSVKHSKHGSFIGCNNYPNCAYTRPLVQHESIETQV 66
           QL+   E  ++    +CP+CG+ +L +K S+ G F+GC NYP C YTRP+    +   + 
Sbjct: 601 QLYPPREDGVDPR--VCPKCGAGQLHLKTSRTGGFVGCGNYPECNYTRPISGEGAEGYER 658

Query: 67  IEGSKCPECGHELAVKSGRFGIFI 90
           I G    + G E+ +KSGRFG ++
Sbjct: 659 ILGE---DDGDEIHLKSGRFGPYV 679



 Score = 39.3 bits (90), Expect = 2e-07
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)

Query: 104 PDQESDKPQVACPECKTGKLEHRTSRFGKGFYACSAYPKCKF 145
           P ++   P+V CP+C  G+L  +TSR G GF  C  YP+C +
Sbjct: 605 PREDGVDPRV-CPKCGAGQLHLKTSRTG-GFVGCGNYPECNY 644



 Score = 35.8 bits (81), Expect = 2e-06
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 72  CPECGH-ELAVKSGRFGIFIGCTQYPSCTH 100
           CP+CG  +L +K+ R G F+GC  YP C +
Sbjct: 615 CPKCGAGQLHLKTSRTGGFVGCGNYPECNY 644