Pairwise Alignments

Query, 188 a.a., topoisomerase DNA-binding C4 zinc finger domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 818 a.a., topoisomerase IA from Dechlorosoma suillum PS

 Score = 59.7 bits (143), Expect = 1e-13
 Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 8/103 (7%)

Query: 9   LFSAHEHALEKEYELCPECGSELSVKHSKHGSFIGCNNYPNCAYT------RPLVQHESI 62
           +F  H  + E     CP+CG  +  +    G F GC+ YP+C +T      + + +   +
Sbjct: 715 VFEQHTESSEAAAVACPQCGKPMRRRKGGTGFFWGCSGYPDCNHTMDDKDGKAVPKQPKV 774

Query: 63  ETQVIE-GSKCPECGH-ELAVKSGRFGIFIGCTQYPSCTHIER 103
             Q  + G  CP C   +L  +      F+GCT+YP+C H ER
Sbjct: 775 ARQAGKVGETCPTCQKGKLTGRQSNGTSFLGCTKYPACRHYER 817



 Score = 42.4 bits (98), Expect = 2e-08
 Identities = 31/100 (31%), Positives = 43/100 (43%), Gaps = 19/100 (19%)

Query: 102 ERPDQESDKPQVACPECKTGKLEHRTSRFGKGFYACSAYPKC---------KFIVNYPPV 152
           E+  + S+   VACP+C  GK   R       F+ CS YP C         K +   P V
Sbjct: 717 EQHTESSEAAAVACPQC--GKPMRRRKGGTGFFWGCSGYPDCNHTMDDKDGKAVPKQPKV 774

Query: 153 -------GETCPSCGFGILVERKGAAGMRLECPQ-KSCKY 184
                  GETCP+C  G L  R+      L C +  +C++
Sbjct: 775 ARQAGKVGETCPTCQKGKLTGRQSNGTSFLGCTKYPACRH 814