Pairwise Alignments

Query, 188 a.a., topoisomerase DNA-binding C4 zinc finger domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 180 a.a., type I DNA topoisomerase from Escherichia coli Nissle 1917

 Score =  176 bits (446), Expect = 2e-49
 Identities = 73/162 (45%), Positives = 105/162 (64%), Gaps = 2/162 (1%)

Query: 22  ELCPECGSELSVKHSKHGSFIGCNNYPNCAYTRPLVQH-ESIETQVIEGSKCPECGHELA 80
           E CP+CG+EL ++  KHG F+GC+ YP C Y RPL    +    +V+EG  CP CG  L 
Sbjct: 13  ESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLV 72

Query: 81  VKSGRFGIFIGCTQYPSCTHIERPDQESDKPQVACPECKTGKLEHRTSRFGKGFYACSAY 140
           ++ GRFG+FIGC+ YP C H E  D+  D+  + CP+C+TG L  R SR+GK F++C  Y
Sbjct: 73  LRQGRFGMFIGCSNYPECEHTELIDKP-DETAITCPQCRTGHLVQRRSRYGKTFHSCDRY 131

Query: 141 PKCKFIVNYPPVGETCPSCGFGILVERKGAAGMRLECPQKSC 182
           P+C+F +N+ P+   CP C + +L+E+K A G++  C  K C
Sbjct: 132 PECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQC 173