Pairwise Alignments

Query, 188 a.a., topoisomerase DNA-binding C4 zinc finger domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 900 a.a., DNA topoisomerase I (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 51.2 bits (121), Expect = 5e-11
 Identities = 21/50 (42%), Positives = 29/50 (58%)

Query: 104 PDQESDKPQVACPECKTGKLEHRTSRFGKGFYACSAYPKCKFIVNYPPVG 153
           P +E  KP   CP C+ G+L  RT+R G  F  CS YP+C++   + P G
Sbjct: 623 PPREDGKPPRLCPNCEIGQLSMRTARSGGAFIGCSNYPECRYTRPFGPPG 672



 Score = 50.4 bits (119), Expect = 9e-11
 Identities = 38/99 (38%), Positives = 51/99 (51%), Gaps = 11/99 (11%)

Query: 1   MMSKIDE----QLFSAHEHALEKEYELCPECG-SELSVKHSKHG-SFIGCNNYPNCAYTR 54
           ++ KI+E     LF   E    K   LCP C   +LS++ ++ G +FIGC+NYP C YTR
Sbjct: 609 VLEKINEVLAPHLFPPREDG--KPPRLCPNCEIGQLSMRTARSGGAFIGCSNYPECRYTR 666

Query: 55  PLVQHESIETQVI--EGSKCPE-CGHELAVKSGRFGIFI 90
           P       E   I  EG    E  G E+ V  GRFG ++
Sbjct: 667 PFGPPGMEEASGIPPEGKLLGEDGGDEIRVFKGRFGPYV 705



 Score = 30.0 bits (66), Expect = 1e-04
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)

Query: 72  CPECG-HELAVKSGRFG-IFIGCTQYPSCTH 100
           CP C   +L++++ R G  FIGC+ YP C +
Sbjct: 634 CPNCEIGQLSMRTARSGGAFIGCSNYPECRY 664