Pairwise Alignments

Query, 266 a.a., hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 388 a.a., Predicted signal transduction protein (NCBI) from Rhodospirillum rubrum S1H

 Score = 53.1 bits (126), Expect = 9e-12
 Identities = 72/275 (26%), Positives = 112/275 (40%), Gaps = 35/275 (12%)

Query: 4   IEQALASPQL--IAEKVLKLPSK---VLELDRKLADPQFDTKDLLALIEQDPLLSVEVLK 58
           + + LA P L  +A  +  LPS     L L   +ADP  +T  +  +I +D  ++ E+LK
Sbjct: 121 LREILADPALRDLAASLRTLPSPPDLYLRLTAAMADPAVNTSTIARMIAEDMAMTAELLK 180

Query: 59  LCNSPAFKRGEREVTSLQQALVQLGREQLRRFVTSSLVREMLDIKPIYFRRFG-----AE 113
           + NS  F    R +T+  QA+  LG E +   V  + +          FR+F       E
Sbjct: 181 ITNSSYFALPSR-ITTAAQAVRLLGLETVCVLVLHAGI----------FRQFQGHPGLGE 229

Query: 114 IWR----HSMQVAFLASELSEED------RDTAFLLGLLHDVGKLAIFKMLLDAF--VQA 161
           I R    H +    LA +L+ ED      R  A   G++ D+G L +     DAF  + A
Sbjct: 230 ILRALSGHGVAKGLLAQKLAAEDGADEAVRAQAHCAGMMADIGALVLLDAYPDAFQTMIA 289

Query: 162 EPGEQPNSWLFRQVMTAKSLTLSALLAKHWQLPSTFETELDKLAHVHTRPNEGIAAV--V 219
           + G      + R    A    L A +   W  P      +    H     N+G  A+  V
Sbjct: 290 KAGRGKLEAVERAAFGASHAQLGAFILGLWGFPDPVIEAVLYQWHPSQCLNQGRGALSYV 349

Query: 220 WRANVISEISMLQQASKLPADMLSNLLALVGLEQA 254
             A V    S L        D+ ++  A +GL+ +
Sbjct: 350 HLACVRGNASPLGPPGMGECDLDADYAARLGLDHS 384