Pairwise Alignments

Query, 805 a.a., DNA gyrase, B subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 827 a.a., DNA gyrase subunit B from Azospirillum brasilense Sp245

 Score =  862 bits (2227), Expect = 0.0
 Identities = 460/825 (55%), Positives = 583/825 (70%), Gaps = 27/825 (3%)

Query: 1   MSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCTDI 60
           + +  Y + SI VL+GLDAVRKRPGMYIGDTDDG+GLHHMV+EVVDN+IDEALAG+C  +
Sbjct: 10  LPQQDYGAESITVLRGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGYCDAV 69

Query: 61  TITIHVDGSVSVKDDGRGIPVSIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120
            + ++ DGSV+V+D+GRGIP  IH EEGVSAAEV+MT LHAGGKF+ NSYKVSGGLHGVG
Sbjct: 70  VVQLNADGSVTVRDNGRGIPTDIHSEEGVSAAEVVMTQLHAGGKFNQNSYKVSGGLHGVG 129

Query: 121 VSVVNALSKKLQLTIRRDGKVHEQFYTHGVPDAPIKEIGDATK-----------TGTEIR 169
           VSVVNALS+ L+L I R+G+     + HGV D  + +IG A             +GTE+ 
Sbjct: 130 VSVVNALSETLELRIWRNGREWFMRFRHGVADERLADIGAAPMVDDGNGGQKPLSGTEVT 189

Query: 170 FWPSEQTFSNVEFHFEILAKRVRELSFLNSGVGIRLVDER--DNKNEFFKYEGGISAFVD 227
           F PS+ TF+N EF F  L  R+REL+FLNSGV + L D R  + K +   YEGG+ AFV+
Sbjct: 190 FLPSKDTFTNTEFDFATLEHRLRELAFLNSGVRLVLTDARGVEPKVQDLHYEGGLEAFVN 249

Query: 228 YLNRNKTPVNKDVFHFMQERDDG----ITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHL 283
           +L+R+K P++K       ER       +TVE ++QWND Y E   CFTNNIPQ+DGGTHL
Sbjct: 250 WLDRSKVPLHKPAISIKAERPTEHGGVVTVECSLQWNDSYHETTLCFTNNIPQKDGGTHL 309

Query: 284 AGFRSALTRNLNNYMENEGYNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVS 343
           AGFR+ALTR +NNY    G  KK K N +GDDAREGLT V+SVKVPDPKFSSQTKDKLVS
Sbjct: 310 AGFRAALTRAINNYANESGIAKKEKVNLSGDDAREGLTCVLSVKVPDPKFSSQTKDKLVS 369

Query: 344 SEVKAAVEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGG 403
           SEV+  VE  +GE L  Y  E+PADAK +V K+V+AA AREAARKARE+TRRKGALD+  
Sbjct: 370 SEVRPVVEAVVGECLAQYFEEHPADAKRVVQKVVEAAAAREAARKARELTRRKGALDIAS 429

Query: 404 LPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 463
           LPGKLADCQE+DP LSE++IVEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKML
Sbjct: 430 LPGKLADCQERDPALSELFIVEGDSAGGSAKQGRSRQFQAILPLRGKILNVERARFDKML 489

Query: 464 SSQEVATLITALGCGIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELI 523
           SS E+ TLI ALG GIGRDE+NPDKTRYH IIIMTDADVDGSHIRTLLLTFFFRQMPELI
Sbjct: 490 SSAEIGTLIAALGTGIGRDEFNPDKTRYHKIIIMTDADVDGSHIRTLLLTFFFRQMPELI 549

Query: 524 ERGYVYIAQPPLFKVKKGK-QEQYLKDESALTQYLTTQALDGTSIYPSQGAPGMSGEPLE 582
           ERGY+YIAQPPL+++K+G  +E+YLKD+ AL +YL   AL   S+ P+ G+  ++GEPL 
Sbjct: 550 ERGYLYIAQPPLYRIKRGNAKERYLKDDRALEEYLIEAALGDLSVRPADGSL-LNGEPLR 608

Query: 583 RLVTQYREVEAIVARLEQRYPT-HITNRMLYHPMISNDMLADEAKMKEWIDAFIHELVEL 641
            +V Q R     +  L ++     +         +S  +  D A+ ++  +     L  L
Sbjct: 609 EMVEQARGGRLHIETLARKAGNLSVVESAAVSGALSVALSQDTAQAQQAAETVAARLNAL 668

Query: 642 ENSGVLYSGEPVLDPERKVYLPKITIRKHGIDTHYLFSYDFFQSMDYQRIAKLGAALEGL 701
           +  G  + GE +L          +   + G+   +    D  +S + +++  + A L+ +
Sbjct: 669 DVEGG-WRGESLLQGGY-----ALVRTRRGVTHRHHLDADLLKSAEARKLDAIAADLKRV 722

Query: 702 -IEVGGYVQRGDRVKEVGSFIEALDWTISEAKRGLYIQRYKGLGEMNPEQLWETTMDPES 760
             E G   ++    + +   +   D  +   +RG+ IQRYKGLGEMNP+QLWETT+DP  
Sbjct: 723 YAEPGRAFEKQKESRSLTGPVALFDTVMELGRRGVTIQRYKGLGEMNPDQLWETTLDPTK 782

Query: 761 RRMLQVTIDDAVGADQLFTCLMGDQVEPRREFIEANALNVANLDV 805
           R +LQV ++ A  A+++F+ LMGD VEPRREFI+ NAL VANLDV
Sbjct: 783 RSLLQVKVNHADQAEEVFSTLMGDIVEPRREFIQENALKVANLDV 827