Pairwise Alignments

Query, 805 a.a., DNA gyrase, B subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 814 a.a., DNA gyrase subunit B (EC 5.99.1.3) from Xanthomonas campestris pv. campestris strain 8004

 Score =  961 bits (2485), Expect = 0.0
 Identities = 490/806 (60%), Positives = 615/806 (76%), Gaps = 10/806 (1%)

Query: 5   SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCTDITITI 64
           +YDSS I VL+GL+AVRKRPGMYIGD  DGTGLHHMVFEVVDNS+DEALAGH  DI + I
Sbjct: 14  TYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDEALAGHADDIVVKI 73

Query: 65  HVDGSVSVKDDGRGIPVSIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVV 124
           HVDGSV+V D+GRG+PV IH+EEGVSAAEVI+TVLHAGGKFDDNSYKVSGGLHGVGVSVV
Sbjct: 74  HVDGSVAVSDNGRGVPVDIHKEEGVSAAEVILTVLHAGGKFDDNSYKVSGGLHGVGVSVV 133

Query: 125 NALSKKLQLTIRRDGKVHEQFYTHGVPDAPIKEIGDATKTGTEIRFWPSEQTFSNVEFHF 184
           NALS+ L L I RDG  ++Q Y  G P  P+K++  +TK GT +RF P+ + FS+VEFH+
Sbjct: 134 NALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQLEASTKRGTTLRFKPAVEIFSDVEFHY 193

Query: 185 EILAKRVRELSFLNSGVGIRLVDER-DNKNEFFKYEGGISAFVDYLNRNKTPVNKDVFHF 243
           +ILA+R+RELSFLNSGV I L+DER + + + F YEGGI +FV++L + KTP++ +V   
Sbjct: 194 DILARRLRELSFLNSGVKIALIDERGEGRRDDFHYEGGIRSFVEHLAQLKTPLHPNVISV 253

Query: 244 MQERDDGITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLAGFRSALTRNLNNYMENEGY 303
             E + GI V+VA+QW D YQE ++CFTNNIPQ+DGGTHLAGFR ALTR L+NY+E  G 
Sbjct: 254 TGEHN-GIVVDVALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRGALTRVLSNYIEQNGI 312

Query: 304 NKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKAAVEQTMGEKLNDYLL 363
            K+ K   TGDD REG+ AV+SVKVPDP FSSQTK+KLVSS+V+ AVE   G +L ++L 
Sbjct: 313 AKQAKITLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPAVENAFGARLQEFLQ 372

Query: 364 ENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPGLSEIYI 423
           ENP +AK I GKIVDAARAREAARKAR++TRRKGALD+ GLPGKLADCQEKDP LSE++I
Sbjct: 373 ENPNEAKAITGKIVDAARAREAARKARDLTRRKGALDIAGLPGKLADCQEKDPALSELFI 432

Query: 424 VEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDE 483
           VEGDSAGGSAKQGRNRKNQA+LPL+GKILNVE+ARFD+ML+S +V TLITALG GIGRDE
Sbjct: 433 VEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLASDQVGTLITALGTGIGRDE 492

Query: 484 YNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQPPLFKVKKGKQ 543
           YNPDK RYH II+MTDADVDGSHIRTLLLTFF+RQMPELIERGY+YI  PPL+K+K+GK 
Sbjct: 493 YNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKS 552

Query: 544 EQYLKDESALTQYLTTQALDGTSIYPSQGAPGMSGEPLERLVTQYREVEAIVARLEQRYP 603
           E YLKD++AL  YL + A++G ++ P+   P ++GE LE+L+  +   +  +AR   RY 
Sbjct: 553 ELYLKDDAALNAYLASSAVEGAALIPASDEPPITGEALEKLLLLFAGAKEAIARNAHRYD 612

Query: 604 THITNRMLYHPMISNDMLADEAKMKEWIDAFIHELVELENSGVLYSGEPVL--DPER-KV 660
             +   ++  P +    L  E  +   +DA    L  + N G L +    L  DP     
Sbjct: 613 PALLTALIDLPPLDVVQLQAEGDVHPTLDA----LQAVLNRGTLGTARYHLRFDPATDSA 668

Query: 661 YLPKITIRKH-GIDTHYLFSYDFFQSMDYQRIAKLGAALEGLIEVGGYVQRGDRVKEVGS 719
               +++RKH G +   +     F+S + + + ++  AL GL+  G  + RG++   + S
Sbjct: 669 AASLVSVRKHMGEEFTQVLPMGAFESGELRPLREVALALHGLVREGAQILRGNKSHPITS 728

Query: 720 FIEALDWTISEAKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIDDAVGADQLFT 779
           F +A  W + EAKRG  +QR+KGLGEMN EQLWETT++P++RR+LQV I+DAV ADQ+F+
Sbjct: 729 FAQAQAWLLEEAKRGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAADQIFS 788

Query: 780 CLMGDQVEPRREFIEANALNVANLDV 805
            LMGD VEPRR+FIE NAL V+NLD+
Sbjct: 789 TLMGDVVEPRRDFIEDNALKVSNLDI 814