Pairwise Alignments

Query, 805 a.a., DNA gyrase, B subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 645 a.a., DNA gyrase subunit B from Synechococcus elongatus PCC 7942

 Score =  565 bits (1456), Expect = e-165
 Identities = 290/566 (51%), Positives = 389/566 (68%), Gaps = 12/566 (2%)

Query: 4   NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCTDITIT 63
           N Y +S I+VL+GL+ VRKRPGMYIG T    GLHH+V+EVVDN++DEALAG+C  I + 
Sbjct: 3   NEYGASQIQVLEGLEPVRKRPGMYIGSTGP-KGLHHLVYEVVDNAVDEALAGYCNTIDVR 61

Query: 64  IHVDGSVSVKDDGRGIPVSIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 123
           +  DGS  V D+GRGIP  IH + G SA E ++T+LHAGGKF    YKVSGGLHGVGVSV
Sbjct: 62  LLEDGSCQVTDNGRGIPTDIHPQTGKSALETVLTILHAGGKFGGGGYKVSGGLHGVGVSV 121

Query: 124 VNALSKKLQLTIRRDGKVHEQFYTHGVPDAPIKEIGDAT-KTGTEIRFWPSEQTFSNV-E 181
           VNALS+ +++T+ R+GK H+Q +  G P   ++   DA  + GT++RF P    FS   E
Sbjct: 122 VNALSEYVEVTVWREGKTHQQRFEQGNPIGELQVAPDADDRRGTQVRFKPDATIFSETTE 181

Query: 182 FHFEILAKRVRELSFLNSGVGIRLVDER-------DNKNEFFKYEGGISAFVDYLNRNKT 234
           F +  LA R++EL++LN+GV I   DER       +   E + +EGGI  +V Y+N +K 
Sbjct: 182 FDYGTLASRLKELAYLNAGVRIDFTDERLQLTKNHEPHQETYYFEGGIREYVAYMNTDKQ 241

Query: 235 PVNKDVFHFMQERDDGITVEVAMQWN-DGYQENIFCFTNNIPQRDGGTHLAGFRSALTRN 293
            ++ ++  F+Q   DG+ VE A+QW  D Y +NI  F NNI   DGGTH+ G ++ LTR 
Sbjct: 242 ALHSEII-FVQSEKDGVQVEAALQWCVDAYSDNILGFANNIRTIDGGTHIEGLKTVLTRT 300

Query: 294 LNNYMENEGYNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKAAVEQT 353
           +N         K    N +G++ REGLTA++SVKVPDP+F  QTK KL ++EV+  V+  
Sbjct: 301 MNTIARKRNKRKDADNNLSGENIREGLTAIVSVKVPDPEFEGQTKTKLGNTEVRGIVDTL 360

Query: 354 MGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLADCQE 413
           +GE L +YL  +P+ A LI+ K + A  A EAAR+ARE+ RRK  L+   LPGKLADC  
Sbjct: 361 VGETLTEYLEFHPSVADLILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSS 420

Query: 414 KDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 473
           +DPG SEI+IVEGDSAGGSAKQGR+R+ QAILPL+GKILN+EK    K+  + E+  LIT
Sbjct: 421 RDPGESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALIT 480

Query: 474 ALGCGIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQP 533
           ALG GI  +E++  + RYH I+IMTDADVDG+HIRTLLLTFF+R    L+E+GY+YIA P
Sbjct: 481 ALGLGIKGEEFDASQLRYHRIVIMTDADVDGAHIRTLLLTFFYRYQRSLLEQGYIYIACP 540

Query: 534 PLFKVKKGKQEQYLKDESALTQYLTT 559
           PL+K+++G+   Y  +E  L + + T
Sbjct: 541 PLYKLERGRNHYYCYNERELQERIAT 566



 Score = 94.4 bits (233), Expect = 2e-23
 Identities = 46/71 (64%), Positives = 58/71 (81%), Gaps = 2/71 (2%)

Query: 737 IQRYKGLGEMNPEQLWETTMDPESRRMLQVTIDDAVGADQLFTCLMGDQVEPRREFIEAN 796
           IQR+KGLGEM P+QLWETTMDPE+R M +V I+DA  AD++FT LMGD+V+PRREFIE  
Sbjct: 575 IQRFKGLGEMMPQQLWETTMDPETRTMKRVEIEDAAEADRIFTILMGDRVQPRREFIETY 634

Query: 797 A--LNVANLDV 805
              L++A LD+
Sbjct: 635 GPQLSMAALDI 645