Pairwise Alignments

Query, 805 a.a., DNA gyrase, B subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 848 a.a., DNA gyrase, B subunit from Sphingomonas koreensis DSMZ 15582

 Score =  833 bits (2152), Expect = 0.0
 Identities = 460/837 (54%), Positives = 575/837 (68%), Gaps = 38/837 (4%)

Query: 2   SENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCTDIT 61
           + NSY + SIKVLKGLDAVRKRPGMYIGDTDDG+GLHHMVFEV DN+IDEALAGHC  I 
Sbjct: 17  NSNSYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEALAGHCDRII 76

Query: 62  ITIHVDGSVSVKDDGRGIPVSIHEEEGVSAAEVIMTVLHAGGKF----DDNSYKVSGGLH 117
           I ++ DGSVSV+D+GRGIP  IH EEGVSAAEVIMT LHAGGKF    DDN+YKVSGGLH
Sbjct: 77  IQLNADGSVSVEDNGRGIPTGIHAEEGVSAAEVIMTQLHAGGKFENTSDDNAYKVSGGLH 136

Query: 118 GVGVSVVNALSKKLQLTIRRDGKVHEQFYTHGVPDAPIKEIGDAT-KTGTEIRFWPSEQ- 175
           GVGVSVVNALS+ L L I RDG+ H   + +G   AP+K IG +  K GT + F  S + 
Sbjct: 137 GVGVSVVNALSEWLDLNIWRDGEEHYMRFAYGDATAPLKVIGPSNGKKGTRVTFLASTEK 196

Query: 176 ------TFSN-VEFHFEILAKRVRELSFLNSGVGIRLVDERDN--KNEFFKYEGGISAFV 226
                 TF N +E+ FE L  R REL+FLNSGV + L D R    K     YEGGI+AFV
Sbjct: 197 VPGDGGTFKNQIEYDFEKLEHRYRELAFLNSGVRLFLRDARHEEVKEVELFYEGGIAAFV 256

Query: 227 DYLNRNKTPVNKDVFHFMQERDDGITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLAGF 286
            +L+RNK+P+  D      +RDD I ++VA++WND Y EN+ CFTNNIPQRDGGTHLA F
Sbjct: 257 KWLDRNKSPLFPDPISVNGQRDD-IGIDVALEWNDSYYENVLCFTNNIPQRDGGTHLAAF 315

Query: 287 RSALTRNLNNYMENEGYNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEV 346
           R+ALTR +N+Y +  G  KK K   TGDD REGLTA++SVK+PDPKFSSQTKDKLVSSEV
Sbjct: 316 RAALTRTINSYADKSGLLKKEKVTLTGDDMREGLTAIVSVKLPDPKFSSQTKDKLVSSEV 375

Query: 347 KAAVEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPG 406
           +  +E  M +K++D+L ENPA A+ I+ K++DAA AREAA+KARE+TRRKG +D+  LPG
Sbjct: 376 RQPLEALMADKMSDWLEENPALARAIIQKVIDAAAAREAAKKARELTRRKGVMDIASLPG 435

Query: 407 KLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQ 466
           KLADCQE+DP  SE+++VEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFD+MLSS+
Sbjct: 436 KLADCQERDPAKSELFLVEGDSAGGSAKQGRDRHFQAILPLRGKILNVERARFDRMLSSK 495

Query: 467 EVATLITALGCGIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERG 526
           E+ TLI A+G GIGRD++N +K RYH I+IMTDADVDG+HIRTLLLTFF+RQMPE+IE G
Sbjct: 496 EIGTLIQAMGTGIGRDDFNLEKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPEIIENG 555

Query: 527 YVYIAQPPLFKVKKGKQEQYLKDESALTQYLTTQALDGTSIYPSQGAPGMSGEPLERLVT 586
           +++IAQPPL+K  KG+ E YLKD++AL  YL    + G  +  S+G   + G+ L RLV 
Sbjct: 556 HLFIAQPPLYKASKGRSEVYLKDDAALDDYLVEAGVGGNRLETSEGT--ILGQDLARLVE 613

Query: 587 QYREVEAIVARLEQRYPTHITNRMLYHPMIS--------NDMLADEAKMKEWIDAFIHEL 638
             R ++ ++  + +RY   I   +     +          + LA   K  +  D      
Sbjct: 614 HARRMKTLMRYVPRRYDPAIIEALALGSALDPEATREQRGERLAAVTKRLDLTDEDARWS 673

Query: 639 VELENSG-----VLYSGEPVLDPERKVYLPKITIRK-HGIDTHYLFSYDFFQSM----DY 688
             +   G      L+ G          +L     RK H +      SY     +      
Sbjct: 674 ARVTEDGGFHFERLWRGVTDHHIVEAAFLTSAEGRKLHALAAEQAESYAAVSKLVSVKSA 733

Query: 689 QRIAKLGAALEGLIEVGGYVQRGDRVKEVGSFIEALDWTISEAKRGLYIQRYKGLGEMNP 748
           Q  A+   A+EG  E      +G+ +  V    E L+  ++  ++GL IQRYKGLGEMN 
Sbjct: 734 QAEAEAAPAVEGEDEEPVVAAKGETL--VSRPSELLNAILASGRKGLSIQRYKGLGEMNA 791

Query: 749 EQLWETTMDPESRRMLQVTIDDAVGADQLFTCLMGDQVEPRREFIEANALNVANLDV 805
           EQLWETT+DP++R ML V ID A  AD++FT LMGD VEPRREFI+ NAL+VANLDV
Sbjct: 792 EQLWETTLDPQNRSMLVVAIDQADVADEIFTRLMGDVVEPRREFIQENALSVANLDV 848