Pairwise Alignments

Query, 805 a.a., DNA gyrase, B subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 845 a.a., DNA gyrase subunit B from Cupriavidus basilensis FW507-4G11

 Score =  898 bits (2320), Expect = 0.0
 Identities = 473/834 (56%), Positives = 590/834 (70%), Gaps = 33/834 (3%)

Query: 3   ENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCTDITI 62
           ++SY + SI++L+GL+AVRKRPGMYIGDT DGTGLHH+VFEV+DNSIDEALAG CT+IT+
Sbjct: 14  QDSYGAGSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGWCTEITV 73

Query: 63  TIHVDGSVSVKDDGRGIPVSIH----EEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHG 118
           TIH D S+S+ D+GRGIP  +      E   SAAE+ MT LHAGGKF+ NSYKVSGGLHG
Sbjct: 74  TIHSDNSISITDNGRGIPPLVKFDDKHEPKRSAAEIAMTELHAGGKFNQNSYKVSGGLHG 133

Query: 119 VGVSVVNALSKKLQLTIRRDGKVHEQFYTHGV-----------PD------APIKEIGDA 161
           VGVS VNALSK L+LT+RRDG+ H   +  G            PD      +P+K +G  
Sbjct: 134 VGVSCVNALSKWLRLTVRRDGQAHLLEFAQGAVQNRLVETVTGPDGQPVEVSPMKILGPT 193

Query: 162 TKTGTEIRFWPSEQTFSNVEFHFEILAKRVRELSFLNSGVGIRLVDERDNKNEFFKYEGG 221
            K GTE+ F   E+ F+NVEFH+EILAKR+RELSFLN+GV IRL D+R  K E F + GG
Sbjct: 194 DKRGTEVHFLADEEIFTNVEFHYEILAKRIRELSFLNNGVHIRLADQRTGKEEDFAFSGG 253

Query: 222 ISAFVDYLNRNKTPVNKDVFHFMQERDDGITVEVAMQWNDGYQENIFCFTNNIPQRDGGT 281
           +  FV+Y+N+ K+ ++ ++F+   E+D GI VEV+MQWNDGY E + CFTNNIPQRDGGT
Sbjct: 254 VKGFVEYINKGKSTLHPNIFYANTEKD-GIAVEVSMQWNDGYNEQVLCFTNNIPQRDGGT 312

Query: 282 HLAGFRSALTRNLNNYMENEGYNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKL 341
           HL G R+A+TR +N Y+E     KK K   TGDD REGL  V+SVKVP+PKFSSQTKDKL
Sbjct: 313 HLTGLRAAMTRVMNKYIEENEIAKKAKVETTGDDMREGLACVLSVKVPEPKFSSQTKDKL 372

Query: 342 VSSEVKAAVEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDL 401
           VSSEV+  VE+ + + L D+LLE P DAK+I GKIVDAARAREAARKAREMTRRKG LD 
Sbjct: 373 VSSEVRLPVEELVAKALGDFLLETPVDAKIICGKIVDAARAREAARKAREMTRRKGVLDG 432

Query: 402 GGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 461
            GLPGKLADCQEKDP  SE+++VEGDSAGGSAKQGR+RK QAILPLKGKILNVE+ARFDK
Sbjct: 433 MGLPGKLADCQEKDPAQSELFLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDK 492

Query: 462 MLSSQEVATLITALGCGIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPE 521
           MLSSQEV TLITALG GIG+D+YN DK RYH IIIMTDADVDGSHIRTLLLTFF+RQMP+
Sbjct: 493 MLSSQEVLTLITALGTGIGKDDYNLDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPD 552

Query: 522 LIERGYVYIAQPPLFKVKKGKQEQYLKDESALTQYLTTQALDGTSIYPSQGAPGMSGEPL 581
           +IERG+VYIAQPPL+K+K GK+E+Y+KD++ L  YL   A++  ++    G+  ++G+ L
Sbjct: 553 IIERGHVYIAQPPLYKIKHGKEERYIKDDNELNAYLLRLAMEKAALVNPDGSE-VAGDAL 611

Query: 582 ERLVTQYREVEAIVARLEQRYPTHITNRMLYHPMISNDMLADEAKMKEWIDAFIHELVEL 641
             L  QY+  EA++ RL +   +     +     +  D  A        + A + E+   
Sbjct: 612 TELARQYQLAEAVIGRLARIVDSDALRAIADGIELDLDSAAAAEASATALKAKLSEMHAK 671

Query: 642 ENSGVLYSGEPV------LDPERKVYLPKITIRKHGIDTHYLFSYDFFQSMDYQRIAKLG 695
              G   + +         D +   +   I  R HG         DF    DY  ++   
Sbjct: 672 TLLGAAVNDDGTADVYAQFDEKTDKHRLMIARRHHGNVRLSHLDADFVHGADYAALSLAA 731

Query: 696 AALEGLIEVGGYVQRGD----RVKEVGSFIEALDWTISEAKRGLYIQRYKGLGEMNPEQL 751
              +GLI  G  V+RG+    R + V  F  A+ W +SEA+RG+  QRYKGLGEMNPEQL
Sbjct: 732 KTFQGLIAEGTKVRRGEGEKMRDQTVNDFHAAMQWLLSEAERGVSRQRYKGLGEMNPEQL 791

Query: 752 WETTMDPESRRMLQVTIDDAVGADQLFTCLMGDQVEPRREFIEANALNVANLDV 805
           +ETT+D   RR+L+V I+DA+ ADQ+FT LMGD+VEPRR FIE+NAL   N+DV
Sbjct: 792 FETTLDVTQRRLLKVQIEDAIAADQIFTTLMGDEVEPRRNFIESNALVARNIDV 845