Pairwise Alignments

Query, 805 a.a., DNA gyrase, B subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 823 a.a., DNA gyrase subunit B from Burkholderia phytofirmans PsJN

 Score =  919 bits (2376), Expect = 0.0
 Identities = 468/822 (56%), Positives = 590/822 (71%), Gaps = 27/822 (3%)

Query: 3   ENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCTDITI 62
           +NSY +SSI++L+GL+AVRKRPGMYIGDT DGTGLHH+VFEV+DNSIDEALAGHC DI +
Sbjct: 10  DNSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGHCNDIQV 69

Query: 63  TIHVDGSVSVKDDGRGIPVSIHEEEGV----SAAEVIMTVLHAGGKFDDNSYKVSGGLHG 118
            IH D S+S+ D+GRG+P  +  ++      SAAE++MT LHAGGKFD NSYKVSGGLHG
Sbjct: 70  IIHADNSISITDNGRGVPTGLKMDDKHDPKRSAAEIVMTELHAGGKFDQNSYKVSGGLHG 129

Query: 119 VGVSVVNALSKKLQLTIRRDGKVHEQFYTHGVPD------------APIKEIGDATKTGT 166
           VGVS VNALS  L+LTIRRDGK H   +  GVP             +PI+  G+    GT
Sbjct: 130 VGVSCVNALSAWLRLTIRRDGKKHFMEFHRGVPQNRIIEEIDGVAVSPIQVTGETENRGT 189

Query: 167 EIRFWPSEQTFSNVEFHFEILAKRVRELSFLNSGVGIRLVDERDNKNEFFKYEGGISAFV 226
           E+ F   E  F N+E+H++ILAKR+RELSFLN+GV I+L D+R  K E F + GG+  FV
Sbjct: 190 EVHFLADETIFGNIEYHYDILAKRIRELSFLNNGVRIKLTDQRTGKEEDFAFVGGVKGFV 249

Query: 227 DYLNRNKTPVNKDVFHFMQERDDGITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLAGF 286
           +Y+N+NK+ ++ ++FH   E+D G+ VEVAMQWND Y EN+ CFTNNIPQRDGGTHL G 
Sbjct: 250 EYINKNKSVLHPNIFHISGEKD-GVGVEVAMQWNDSYNENVLCFTNNIPQRDGGTHLTGL 308

Query: 287 RSALTRNLNNYMENEGYNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEV 346
           R+A+TR LN Y+ +    KK K   +GDD REGL+ V+SVKVP+PKFS+QTKDKLVSSEV
Sbjct: 309 RAAMTRVLNKYINDHEVAKKAKVETSGDDMREGLSCVLSVKVPEPKFSAQTKDKLVSSEV 368

Query: 347 KAAVEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPG 406
           +A VE  + + L ++LLE P DAK+I  KIVDAARAR+AARKAREMTRRKG LD  GLPG
Sbjct: 369 RAPVEDVVAKALEEFLLETPNDAKIICSKIVDAARARDAARKAREMTRRKGVLDGVGLPG 428

Query: 407 KLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQ 466
           KLADCQEKDP  SEIYIVEGDSAGGSAKQGR+RK QAILPL+GK+LNVEKAR+DK+LSS+
Sbjct: 429 KLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLLSSE 488

Query: 467 EVATLITALGCGIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERG 526
           ++ TLITALGCGIG+++YN DK RYH IIIMTDADVDG+HIRTLLLTFF+RQMPE+IERG
Sbjct: 489 QIVTLITALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPEMIERG 548

Query: 527 YVYIAQPPLFKVKKGKQEQYLKDESALTQYLTTQALDGTSIYPSQGAPGMSGEPLERLVT 586
           Y+YIAQPPLFK+K GK E+YLKDE+ +  ++   AL G+ +  S+G+  ++G+ L  L  
Sbjct: 549 YIYIAQPPLFKIKAGKDERYLKDEAEVNAHILKLALQGSELSASEGSTPITGDALGELAR 608

Query: 587 QYREVEAIVARLEQRYPTHITNRMLYHPMISNDMLADEAKMKEWIDAFIHELVELENSGV 646
            Y   +A+V RL + Y       ++       D +A +   +E  DA    L        
Sbjct: 609 AYLLAQAVVNRLSRLYDAGALEAIM-------DGIAIDLSSEEAADASAKALEAKLRDDP 661

Query: 647 LYSGEPV---LDPERKVYLPKITIRKHGIDTHYLFSYDFFQSMDYQRIAKLGAALEGLIE 703
           L     V    DP R++   ++    HG     +   DF  + DYQ++       +GLI 
Sbjct: 662 LKPEVKVTTMYDPVRELRSLRVARTHHGNQKISVLDQDFQLTADYQQLINTANTFKGLIG 721

Query: 704 VGGYVQRGDRVKEVGSFIEALDWTISEAKRGLYIQRYKGLGEMNPEQLWETTMDPESRRM 763
            G  ++RG+R   V  F  A+ W +++A+R +  QRYKGLGEMNP QLWETTMDP  RR+
Sbjct: 722 TGAVIKRGERSMAVTDFKSAMKWLLADAERNISKQRYKGLGEMNPGQLWETTMDPTVRRL 781

Query: 764 LQVTIDDAVGADQLFTCLMGDQVEPRREFIEANALNVANLDV 805
           L+V I+DA+ AD +FT LMGD VEPRR FIE+NAL   N+DV
Sbjct: 782 LRVQIEDAIAADGIFTTLMGDDVEPRRAFIESNALRAGNIDV 823