Pairwise Alignments

Query, 360 a.a., DNA replication and repair protein RecF (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 365 a.a., DNA replication and repair protein RecF from Phaeobacter inhibens DSM 17395

 Score = 94.7 bits (234), Expect = 3e-24
 Identities = 96/370 (25%), Positives = 161/370 (43%), Gaps = 31/370 (8%)

Query: 1   MSLIRLNIDSFRNIQLAQLSPSEGINLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRV 60
           ++L  L +  FR+   A L        I+G NG+GKT+ILEA+     GR  R   +  +
Sbjct: 2   LALTTLTLSHFRSHLRADLHLDGRPVAIHGANGAGKTNILEAVSLFSPGRGLRRASAADM 61

Query: 61  INNDQDK-LTLFATLNLPRGDSKIGLRRFRSGETEVKIDGEKVKRLSTLAETLPIQVITP 119
               +     L   L   R   ++          +VKID +   ++  L +   +  + P
Sbjct: 62  ARRPEALGWKLKGQLTAARQSYEVETWSEAGKARQVKIDNKAASQID-LGQICRVVWLIP 120

Query: 120 ESFSLLFEGPKSRRQFIDWGAFHTDPQFYAAWMNVRRVLKQRNQMLRNGSPYDQIQYWDR 179
               L  E  + RR+F+D      DP    A +   + +++RN++L+        Q  D 
Sbjct: 121 AMDRLWIEAAEGRRRFLDRIVLSFDPGHAEATLLYEKAMRERNRLLKE-------QIRDA 173

Query: 180 EFIRYTE--------QVTEIRNRYVDSLNELLKGIIGEFLPQVDVKVSFTRGW--DSKTD 229
            + R  E        ++   R   VD L    +     F P  ++++  + G   D+  D
Sbjct: 174 AWYRVLETQMAESGHRIHAARTAAVDRLRMAQEAAETAF-PAAELELIQSDGGLPDTAAD 232

Query: 230 FAQLLESQYPRDLATGHTVSGPHKADLRLRVGT-----LPAQDALSRGQLKLLVCALRIA 284
             +  E    RDLA G T+ GPH+ DL   +GT     +PA+D  S G+ K L+ +L +A
Sbjct: 233 LQEAFEEGRFRDLAAGRTLLGPHRTDL---LGTYAAKGVPARDC-STGEQKALLVSLILA 288

Query: 285 QGKLLKQQIDKHSIYLVDDLPSELDAQHRQLLLKQLVDTGAQVFVTAIEPAAIVDSLHTP 344
             + L  +     I L+D++ + LD   R  L +++V  GAQ ++T   P    +     
Sbjct: 289 NARALIAEGGAPPILLLDEVSAHLDVIRRAALYQEIVTLGAQAWMTGTGPELFDE--FEG 346

Query: 345 PSRMFHVEHG 354
            ++MF VE G
Sbjct: 347 RAQMFTVEDG 356