Pairwise Alignments

Query, 360 a.a., DNA replication and repair protein RecF (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 361 a.a., DNA replication/repair protein RecF from Pantoea sp. MT58

 Score =  333 bits (853), Expect = 6e-96
 Identities = 169/358 (47%), Positives = 234/358 (65%), Gaps = 1/358 (0%)

Query: 1   MSLIRLNIDSFRNIQLAQLSPSEGINLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRV 60
           M+L RL I  FRNI+ A L  + G N + G NGSGKTS+LEAI+ LG GRSFRS  + RV
Sbjct: 1   MALTRLLIKDFRNIEQADLQLAPGFNFLVGANGSGKTSVLEAIHTLGHGRSFRSLQAGRV 60

Query: 61  INNDQDKLTLFATLNLPRGDSKIGLRRFRSGETEVKIDGEKVKRLSTLAETLPIQVITPE 120
           I +D+    L   L     +  +GL + R+G+++V+IDG    +++ LA+ LP+Q+ITPE
Sbjct: 61  IRHDEAAFVLHGRLENAEREISVGLTKNRAGDSKVRIDGSDGHKVAELAQLLPMQLITPE 120

Query: 121 SFSLLFEGPKSRRQFIDWGAFHTDPQFYAAWMNVRRVLKQRNQMLRNGSPYDQIQYWDRE 180
            FSLL  GPK RR ++DWG FH  P F+ AW N+RR+LKQRN  LR  S Y QI+ WD+E
Sbjct: 121 GFSLLNGGPKYRRAYVDWGCFHNTPGFFNAWNNMRRLLKQRNAALRQVSRYSQIRPWDQE 180

Query: 181 FIRYTEQVTEIRNRYVDSLNELLKGIIGEFLPQVDVKVSFTRGWDSKTDFAQLLESQYPR 240
            +   EQ+++ R  Y  +++  +     +FLP+ +++ SF RGWD ++D+ +LLE  + R
Sbjct: 181 LVPLAEQISQWRAEYSAAISAEITATCSQFLPEFELRFSFQRGWDKESDYGELLERNFER 240

Query: 241 DLATGHTVSGPHKADLRLRVGTLPAQDALSRGQLKLLVCALRIAQGKLLKQQIDKHSIYL 300
           D A  +T SGPHKAD R+R    P +D LSRGQLKLL+CALR+AQG+ L  Q  +  IYL
Sbjct: 241 DRALTYTASGPHKADFRIRAEGTPVEDLLSRGQLKLLMCALRLAQGEFLTSQSGRRCIYL 300

Query: 301 VDDLPSELDAQHRQLLLKQLVDTGAQVFVTAIEPAAIVDSLHTPPSRMFHVEHGRVTV 358
           +DD  SELD   R+LL  +L  T AQVFV+AI    ++D +     +MF VE G++ V
Sbjct: 301 IDDFASELDESRRRLLADRLKATQAQVFVSAISAGHVID-MTDEKGKMFRVEQGKIAV 357