Pairwise Alignments

Query, 360 a.a., DNA replication and repair protein RecF (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 366 a.a., DNA replication/repair protein RecF from Lysobacter sp. OAE881

 Score =  211 bits (536), Expect = 3e-59
 Identities = 128/368 (34%), Positives = 187/368 (50%), Gaps = 16/368 (4%)

Query: 1   MSLIRLNIDSFRNIQLAQLSPSEGINLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRV 60
           M + RL +   R  Q  +L P+ G+NLI G NG+GKT++LEA++ +  GRSFR  +   +
Sbjct: 1   MHVTRLELRHLRRFQDLRLDPAPGLNLITGDNGAGKTTVLEALHLMAYGRSFRGRVRDGL 60

Query: 61  INNDQDKLTLFATLNLPRGDS-------KIGLRRFRSGETEVKIDGEKVKRLSTLAETLP 113
           I      L +F       G S       K GLR      T  ++DG  V +L  L   L 
Sbjct: 61  IRAGDAGLEVFVEWQERAGRSGDDERLRKAGLRHTGQDWTG-RLDGANVAQLGDLCAALA 119

Query: 114 IQVITPESFSLLFEGPKSRRQFIDWGAFHTDPQFYAAWMNVRRVLKQRNQMLRNGSPYDQ 173
           +    P S +L+  G +SRR+++DWG FH +P F   W    R LKQRN +L+  +   Q
Sbjct: 120 VVTFEPGSHALITGGGESRRRYLDWGLFHVEPDFLPVWRRYSRALKQRNALLKVRARDAQ 179

Query: 174 IQYWDREFIRYTEQVTEIRNRYVDSLNELLKGIIGEFLPQVDV-KVSFTRGW-DSKTDFA 231
           +  WD E     E ++  R RY+D L    + ++ +  P + + ++ +  GW   +   A
Sbjct: 180 LDAWDHELAEAGEPLSRFRERYLDLLQVRFEPLLSDLAPALGLSRLEYAPGWRRDEMSLA 239

Query: 232 QLLESQYPRDLATGHTVSGPHKADLRLRVGTLPAQDALSRGQLKLLVCALRIAQGKLLKQ 291
                   RDL  G+T  GPH+AD R+    LP ++ALSRGQ KL   A  +AQ +   +
Sbjct: 240 DAFLLSRERDLVAGYTGVGPHRADWRVVFANLPGREALSRGQSKLTALAALLAQAEHHDE 299

Query: 292 QIDKHSIYLVDDLPSELDAQHRQLLLKQLVDTGAQVFVTAIE--PAAIVDSLHTPPSRMF 349
              +  +  +DDL SELD  H+  +L +L  +GAQVF+T  E  P    D     P   F
Sbjct: 300 THGEWPVVALDDLASELDRHHQGRVLARLQSSGAQVFITGTEAPPGVPTDF----PVHRF 355

Query: 350 HVEHGRVT 357
           HVEHG +T
Sbjct: 356 HVEHGAIT 363