Pairwise Alignments

Query, 360 a.a., DNA replication and repair protein RecF (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 385 a.a., DNA replication and repair protein RecF from Bifidobacterium breve UCC2003

 Score =  111 bits (278), Expect = 3e-29
 Identities = 82/337 (24%), Positives = 155/337 (45%), Gaps = 20/337 (5%)

Query: 1   MSLIRLNIDSFRNIQLAQLSPSEGINLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRV 60
           M + RL +D +R+     +    G+N++ G+NG GKT+++EA+  L  G S R+     +
Sbjct: 1   MHISRLALDHYRSWSQVVVDFVPGVNILVGKNGLGKTNLVEAVEVLSTGASHRASSMLPL 60

Query: 61  INNDQDKLTLFATLNLPRGDSKIGLRRFRS-GETEVKIDGEKVKRLSTLAETLPIQVITP 119
           I   Q   T+ A +    G S        + G    +I+      L  +   +P    TP
Sbjct: 61  IERGQTTATIRANVVDDDGQSTTYEASIHARGANRARINSGTSLYLRDIIGRIPSVSFTP 120

Query: 120 ESFSLLFEGPKSRRQFIDWGAFHTDPQFYAAWMNVRRVLKQRNQMLRN-------GSPYD 172
           E   L+   P +RR  ++      +P +  +     R+ KQR  +L+        G P D
Sbjct: 121 EDQRLVSGDPGARRTLLNQAGALLEPGYMQSLHQFTRIGKQRATLLKQLGASANTGQPVD 180

Query: 173 QI----QYWDREFIRYTEQVTEIRNRYVDSLNELLKGIIGEFLPQVD-VKVSFTRGWDS- 226
            +    + W  +FI    ++T +R R +D L E    +  E     D V +++   +D  
Sbjct: 181 AVLSGLEIWTGQFIEAGVELTRMRARVIDLLAEPFAALYAELTGNDDTVSLTYAPSFDEV 240

Query: 227 ------KTDFAQLLESQYPRDLATGHTVSGPHKADLRLRVGTLPAQDALSRGQLKLLVCA 280
                 +   ++  +  YP ++A G  + GP + DL L +  +PA++  S G++  +  A
Sbjct: 241 LMQDDPRLSISEHFQRIYPGEVARGVNLIGPQRDDLTLNLADMPAREFASNGEMWTMALA 300

Query: 281 LRIAQGKLLKQQIDKHSIYLVDDLPSELDAQHRQLLL 317
           L++A  ++++Q++    I ++DD+ ++LD   R  +L
Sbjct: 301 LKMALFQVIRQRLGLRPIVILDDVFAQLDDNRRTQIL 337