Pairwise Alignments

Query, 460 a.a., chromosomal replication initiator protein DnaA (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 472 a.a., chromosomal replication initiator protein DnaA from Rhodopseudomonas palustris CGA009

 Score =  272 bits (696), Expect = 2e-77
 Identities = 166/471 (35%), Positives = 257/471 (54%), Gaps = 27/471 (5%)

Query: 6   WQQCIGRLQDELSAQQFSMWIRPLQAEMDGDTLV-LYAPNRFVLDWVRDKYINIINQFFT 64
           W +  GRL+  +    +S W   +  E   D  V L  P RF+  W++  Y + +   + 
Sbjct: 9   WSRVKGRLRSSVGEDVYSSWFARMDLESVHDESVHLSVPTRFLKSWIQTHYSDKVLSCWQ 68

Query: 65  EQMGNDAPKL-RFDIGSRPSAKKPEPAPVAAVRVPSPQTKASVGTAFNTTEPVANTNHR- 122
            ++    P++ R D+  R   +   PA      V S + +       +      + NH  
Sbjct: 69  AEL----PEVNRVDLTVRSPVRCATPAKEVPAPVESRRDEQRPSAERSNGATPVSANHDA 124

Query: 123 ---SNINPTYQFDNFVEGKSNQLGKAAALQVAENPGG---AYNPLFLYGGTGLGKTHLLH 176
              S ++P   F +FV G+SN L  AAA QVAE   G    +NPL+++ G GLGKTHLL 
Sbjct: 125 LGGSPLDPRLTFASFVVGRSNTLAHAAAKQVAEGRRGDPVMFNPLYIHSGVGLGKTHLLQ 184

Query: 177 AV---GNGIIKNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFF 233
           AV   GN         KV+Y+ +E+F+   V AL+      FK   R +D L IDD+QF 
Sbjct: 185 AVTWAGNA----GTERKVLYLTAEKFMYGFVAALKTQTSLAFKEALRGIDVLVIDDLQFL 240

Query: 234 ANKDRSQEEFFHTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLTVAIEPPELE 293
             K  +Q EF HT NAL++   Q+++ +DR P +++ +++R++SR   GL V + P   +
Sbjct: 241 QGKT-TQAEFCHTLNALIDAGRQVVVAADRPPADLESLDERVRSRLAGGLVVEMAPLGED 299

Query: 294 TRVAILMRKA-----QESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPIT 348
            R+ IL  +        +  ++P  V  ++A+ +  N R+LEGA+NR++A++    +P+T
Sbjct: 300 LRLGILRSRVVAARTHHASFDVPQPVLEYLARTITHNGRDLEGAINRLLAHSKLNNQPVT 359

Query: 349 IDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKMADMLSKRRSRSVARPRQVAMALS 407
           ++     +RDL+   E K + I++IQ+ VA  Y +  +D+LS RR+ +V RPRQVAM L+
Sbjct: 360 LEMAEHEVRDLIRPSEPKRIKIEDIQRIVARQYNVSRSDLLSSRRTANVVRPRQVAMYLA 419

Query: 408 KELTNQSLPEIGDAFGGRDHTTVLHACRKIAQLREESHDIKEDYANLIRTL 458
           K LT +SLPEIG  FGGRDHTTVLHA RKI  L  +   + ++  +L R L
Sbjct: 420 KTLTLRSLPEIGRRFGGRDHTTVLHAVRKIEGLVSKDTTLSDEVESLKRQL 470