Pairwise Alignments

Query, 541 a.a., inner membrane protein, 60 kDa (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 573 a.a., Inner membrane protein translocase component YidC, long form from Xanthomonas campestris pv. campestris strain 8004

 Score =  343 bits (881), Expect = 8e-99
 Identities = 222/571 (38%), Positives = 314/571 (54%), Gaps = 42/571 (7%)

Query: 1   MESQRNILLIGLLFVSFLLWQQWQADKAPK----PVATESSVVANA--TTNHSADVPEAD 54
           M   R  L+   L V+ LLW +W  DKAP     P+A+++   A        +A+VP A 
Sbjct: 1   MNQTRVFLIFAWLMVAALLWMEWGKDKAPANAPTPIASQAVPAARDPDAAAPAANVPSAQ 60

Query: 55  T----GVPAAVAATQNL------------ITVKTDQLDVQINPVGGDIVYAALVSHKLEQ 98
                G PAAV AT               IT+ +D L ++++  G  ++ A L+     +
Sbjct: 61  AIPQAGSPAAVPATSTTTATPATTGAAPAITLTSDVLRLKLD--GRSVLDAELLQFPQTK 118

Query: 99  GKDQPFVLLEQTKDFTYIAQSGLIGRDGIDSSAKGRAIFAASK--TEFTLADGQDSLEVP 156
              +P  LL +     Y A SG        S   G   F A +  T F LA GQ++L VP
Sbjct: 119 DGTEPVKLLTEDAAHPYNATSGWASER---SPVPGVGGFRAEQPGTTFELAKGQNTLVVP 175

Query: 157 LTYVAENGVTYTKVFVFHRGKFNVNIDYKINNTSAAPLQVQMYGQIKQTIKPSESSMMMP 216
             +   NGV+  ++F   RG + ++I  ++ N S A     ++ ++ +        M  P
Sbjct: 176 FVWNGPNGVSIRRIFTLQRGSYAISIKDEVINKSDAAWNGYVFRKLSRVPTILSRGMTNP 235

Query: 217 ---TYRGAAFSTASVRYEKYNFED-MGKNNLNQPTIGGWAAMLQHYFVSAWIPPATDSNT 272
              ++ GA + +    YE+  F+D M    LN+   GGW A+LQH+F +AWIP   D  +
Sbjct: 236 DSFSFNGATWYSPQEGYERRAFKDYMDDGGLNRQITGGWVALLQHHFFTAWIPQK-DQAS 294

Query: 273 IFSSVSAGGLANIGFRGAVYDVAPGATQEISSQFYVGPKDQKALSALSDT--LNLVVDYG 330
           ++     G       RG  + VAPG +    ++ +VGPK   +L A  D   L+ VVDY 
Sbjct: 295 LYVLAQDGPRDVAELRGPAFTVAPGQSASTEARLWVGPK-LVSLLAKEDVKGLDRVVDYS 353

Query: 331 FLWWLAV---PIHWLLMFYQSFVGNWGVAIILITLTVRGLLFPLTKAQYTSMAKMRNLQP 387
               +A+    + W+L    SF+ NWG AII + + +R  L+PL+ AQY S AKMR  QP
Sbjct: 354 RFSIMAIIGQGLFWVLSHLHSFLHNWGWAIIGLVVLLRLALYPLSAAQYKSGAKMRRFQP 413

Query: 388 KLQDLKERFGDDRQKMGQAMMELYKKEKVNPMGGCLPILLQMPIFIALYWVLLESFELRH 447
           +L  LKER+GDDRQK  QA MEL+KKEK+NPMGGCLP+L+QMPIF ALYWVL+ES ELR 
Sbjct: 414 RLAQLKERYGDDRQKYQQATMELFKKEKINPMGGCLPLLIQMPIFFALYWVLVESVELRQ 473

Query: 448 APFMLWIHDLSVQDPYYILPLLMGVSMFIMQKMQPIAPTMDPMQVKMMQWMPVIFTVFFL 507
           AP++ WI DL+ +DPY+ILP+L    M+  QK+ P  P MDPMQ KMMQ+MP++F V   
Sbjct: 474 APWLGWIQDLTARDPYFILPVLNIAIMWATQKLTP-TPGMDPMQAKMMQFMPLVFGVMMA 532

Query: 508 WFPSGLVLYWLV-GNIVAIIQQKIIYAGLEK 537
           + P+GLVLYW+V G +  +IQ  +I    EK
Sbjct: 533 FMPAGLVLYWVVNGGLGLLIQWWMIRQHGEK 563