Pairwise Alignments

Query, 541 a.a., inner membrane protein, 60 kDa (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 595 a.a., inner membrane protein translocase component YidC from Sinorhizobium meliloti 1021

 Score =  258 bits (658), Expect = 6e-73
 Identities = 169/546 (30%), Positives = 273/546 (50%), Gaps = 56/546 (10%)

Query: 21  QQWQADKAPKPVATESSVVANATTNHSADVPEADTGVPAAVAATQNLITVKTDQLDVQIN 80
           QQ Q     +P A   ++   A       +P A      A+  +   + + T  L   IN
Sbjct: 45  QQTQQQPGAQPAAPGQALPGGA-------IPSAGESRDQAIGKSAR-VAIDTPALSGSIN 96

Query: 81  PVGGDIVYAALVSHKLEQGKDQPFVLL---EQTKDFTYIAQSGLIGRDGIDSSAKGRAIF 137
             G       L  ++       P + L    +T D  Y  + G IG D   S        
Sbjct: 97  LTGARFDDLKLKGYRETVDPKSPVITLFSPAETAD-GYFTEIGYIGSDATGS-------V 148

Query: 138 AASKTEFTLADGQD---SLEVPLTYVAENGVTYTK-VFVFHRGKFNVNIDYKINNTSAAP 193
              +T +TL+ G     S  V L+Y  + G+T+ + + V  R  F V +D  I N +AAP
Sbjct: 149 PGPQTTWTLSGGDKLTPSTPVTLSYTNDKGITFARTISVDDRYMFQV-VD-SIKNETAAP 206

Query: 194 LQVQMYGQIKQTIKPSESSMMMPTYRGAAFSTASVRYEKYNFEDMGKNNLNQP--TIGGW 251
           + +  YG++ +  KP+  S+ +  + G          ++  +  +  +   +P  + GGW
Sbjct: 207 VSLSSYGRVTRFNKPTTPSIYV-LHEGFVGVAGEHGLQEVGYSKVEDDEPVEPGKSTGGW 265

Query: 252 AAMLQHYFVSAWIPP-ATDSNTIFSSVSAGGLA-NIGFRGAVYDVAPGATQEISSQFYVG 309
             +   Y+ +  +PP AT  +  FS  + G       ++     VAPG + E+ +  + G
Sbjct: 266 LGITDKYWAATIVPPQATPFDIRFSHFADGRPRYQSDYKSDAVTVAPGQSVELKNLVFAG 325

Query: 310 PK-----DQKALSALSDTLNLVVDYGFLWWLAVPIHWLLMFYQSFVGNWGVAIILITLTV 364
            K     D   ++      + ++D+G+ +++  P+  ++ F+    GN+G+AI++ T+ V
Sbjct: 326 AKEVPVVDNYEVAYSIPNFDKLIDWGWFYFITKPMFKMMDFFFRLFGNFGIAILITTIVV 385

Query: 365 RGLLFPLTKAQYTSMAKMRNLQPKLQDLKERFGDDRQKMGQAMMELYKKEKVNPMGGCLP 424
           + + FPL   QY SMA M+ +QPK+++LK++FGDDR  + QAMM+LYK+EK+NP+ GC P
Sbjct: 386 KLIFFPLANKQYASMANMKKVQPKMEELKKKFGDDRMGLQQAMMQLYKEEKINPLAGCWP 445

Query: 425 ILLQMPIFIALYWVLLESFELRHAPFMLWIHDLSVQDPYYIL------------------ 466
           IL+Q+P+F ALY V+  + E+RHAPF  WI DLS  DP  I+                  
Sbjct: 446 ILIQIPVFFALYKVIYVTIEMRHAPFFGWIQDLSAPDPTTIINLFGLLPFEGPAFLHLGI 505

Query: 467 -PLLMGVSMFIMQKMQPIAPTMDPMQVKMMQWMPVIFTVFFLWFPSGLVLYWLVGNIVAI 525
            P++MGV+MF+  +M P  P  DP Q  +  WMPV+FT     FP+GLV+YW   N ++I
Sbjct: 506 WPIIMGVTMFLQMRMNPTPP--DPTQAMLFTWMPVVFTFMLASFPAGLVIYWAWNNTLSI 563

Query: 526 IQQKII 531
           +QQ II
Sbjct: 564 LQQGII 569