Pairwise Alignments

Query, 541 a.a., inner membrane protein, 60 kDa (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 541 a.a., inner membrane protein, 60 kDa (RefSeq) from Shewanella amazonensis SB2B

 Score =  888 bits (2295), Expect = 0.0
 Identities = 433/541 (80%), Positives = 485/541 (89%), Gaps = 2/541 (0%)

Query: 1   MESQRNILLIGLLFVSFLLWQQWQADKAPKPVATESSVVANATTNH-SADVPEADTGVPA 59
           MESQRN+LLIGLLFVSFLLWQQW++DKAPKP ATE +  A       ++DVP AD GVPA
Sbjct: 1   MESQRNLLLIGLLFVSFLLWQQWESDKAPKP-ATEVTAAAQIHDQAINSDVPTADAGVPA 59

Query: 60  AVAATQNLITVKTDQLDVQINPVGGDIVYAALVSHKLEQGKDQPFVLLEQTKDFTYIAQS 119
            VAATQNLI V TDQL++QINPVGGDIV+AAL++HKLEQ ++ PFVLLEQ  +F+YIAQS
Sbjct: 60  TVAATQNLILVTTDQLEIQINPVGGDIVHAALLTHKLEQNEEAPFVLLEQKNNFSYIAQS 119

Query: 120 GLIGRDGIDSSAKGRAIFAASKTEFTLADGQDSLEVPLTYVAENGVTYTKVFVFHRGKFN 179
           GLIGRDGIDS+A GRA FAA+   +TLADGQD+LEVPLT   + GVT+TKVFVF RG+F+
Sbjct: 120 GLIGRDGIDSAASGRAKFAAAADAYTLADGQDTLEVPLTLTTDAGVTFTKVFVFKRGQFD 179

Query: 180 VNIDYKINNTSAAPLQVQMYGQIKQTIKPSESSMMMPTYRGAAFSTASVRYEKYNFEDMG 239
           V +DY++ N SAAP+QVQMYGQIKQTI  SESSMMMPTYRGAAFSTA VRYEKY+F+DMG
Sbjct: 180 VGVDYRVANNSAAPVQVQMYGQIKQTITASESSMMMPTYRGAAFSTADVRYEKYSFDDMG 239

Query: 240 KNNLNQPTIGGWAAMLQHYFVSAWIPPATDSNTIFSSVSAGGLANIGFRGAVYDVAPGAT 299
           K +L +PT+GGW AMLQHYFVSAW+P A D NT+F+SVSAGGLANIGF+G+V+DVAPGAT
Sbjct: 240 KKDLEEPTLGGWVAMLQHYFVSAWVPAAADKNTLFTSVSAGGLANIGFKGSVHDVAPGAT 299

Query: 300 QEISSQFYVGPKDQKALSALSDTLNLVVDYGFLWWLAVPIHWLLMFYQSFVGNWGVAIIL 359
           + IS+ FYVGPKDQ ALSALSDTLNLVVDYGFLWWLAVPIHW+LMF+QS V NWGVAIIL
Sbjct: 300 ETISATFYVGPKDQAALSALSDTLNLVVDYGFLWWLAVPIHWILMFFQSLVHNWGVAIIL 359

Query: 360 ITLTVRGLLFPLTKAQYTSMAKMRNLQPKLQDLKERFGDDRQKMGQAMMELYKKEKVNPM 419
           +TLTVRGLL+PLTKAQY SMAKMRNLQPKLQDLK+RFGDDRQKMGQAMMELYKKEKVNPM
Sbjct: 360 VTLTVRGLLYPLTKAQYVSMAKMRNLQPKLQDLKDRFGDDRQKMGQAMMELYKKEKVNPM 419

Query: 420 GGCLPILLQMPIFIALYWVLLESFELRHAPFMLWIHDLSVQDPYYILPLLMGVSMFIMQK 479
           GGCLPILLQMPIFIALYWVLLES ELRHAPFMLWI DLSVQDPYY+LPLLMG SM+ MQK
Sbjct: 420 GGCLPILLQMPIFIALYWVLLESVELRHAPFMLWIQDLSVQDPYYVLPLLMGASMWAMQK 479

Query: 480 MQPIAPTMDPMQVKMMQWMPVIFTVFFLWFPSGLVLYWLVGNIVAIIQQKIIYAGLEKKG 539
           MQP+AP MDPMQ KM+QWMP+IFTVFFLWFP+GLVLYWLVGN+VAI QQKIIYA LEKKG
Sbjct: 480 MQPMAPNMDPMQQKMLQWMPMIFTVFFLWFPAGLVLYWLVGNLVAITQQKIIYASLEKKG 539

Query: 540 L 540
           L
Sbjct: 540 L 540