Pairwise Alignments

Query, 541 a.a., inner membrane protein, 60 kDa (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 605 a.a., inner membrane protein OxaA from Phaeobacter inhibens DSM 17395

 Score =  219 bits (557), Expect = 3e-61
 Identities = 171/592 (28%), Positives = 269/592 (45%), Gaps = 78/592 (13%)

Query: 2   ESQRNILLI-GLLFVSFLLWQQWQADKAPKP----VATESS-----VVANATTNHSADVP 51
           +  +N+LL   L F+  L W  +     P+P    V  E++     V A A  + +A   
Sbjct: 3   DQNKNLLLATALSFLVILGWYVFFPPPEPQPQPDAVVAETAPAGDVVSAPAAASPAAGSE 62

Query: 52  EADTGVPAAVAATQNLITVKTDQLDVQINPVGGDIVYAALVSHKLEQGKDQPFV-LLEQT 110
            A     A  AA    + ++T ++   I+ +GG +   +L  +++   +D   V +L   
Sbjct: 63  GAAVTAEAETAADAPRLAIETPRVSGTISLLGGRLDDLSLKDYRVSLEEDAAIVKMLSPA 122

Query: 111 KD-FTYIAQSGLIGRDGI--DSSAKGRAIFAASKTEFTLADGQDSLEVPLTYVAENGVTY 167
            D   Y A  G     G+  D       ++ A        D      V LT+    G+T+
Sbjct: 123 GDPNAYYALYGWAPGAGLGPDDVPGANTLWQAGGDATLTPDSP----VTLTWDNGKGLTF 178

Query: 168 TKVFVFHRGKFNVNIDYKINNTSAAPLQVQMYGQIKQTIKPSESSMMMPTYRGAAFSTAS 227
            +     +  +   I   + N S   + +  YG + +  +P +       + G     A 
Sbjct: 179 NRTIAVDQD-YLFTITQSVTNASGNTVALAPYGTLARHGEPQDLKNFFILHEGV-IGMAD 236

Query: 228 VRYEKYNFEDM----------GKNNLNQPTIGGWAAMLQHYFVSAWIPPATDSNTIFSSV 277
               + +++DM           +  + Q    GW     HY++S  +P   +    F S+
Sbjct: 237 GTLAEIDYDDMTDFEVDARSGARAEVTQVETNGWIGFTDHYWMSTLVP---EPGQAFRSI 293

Query: 278 SAGGLANIGFRGAVYD---------VAPGATQEISSQFYVGPKDQKALSALS----DTLN 324
                A    R  +Y          VA G T E ++  + G K+   +        +   
Sbjct: 294 -----AKFDERREIYQTDIVLPTVTVADGETSEATTMLFAGAKEWATIRGYQKDGIEGFL 348

Query: 325 LVVDYGFLWWLAVPIHWLLMFYQSFVGNWGVAIILITLTVRGLLFPLTKAQYTSMAKMRN 384
             +D+G+ ++L  PI  +L +  + +GN G AII +T+ ++ L+FPL    Y SMAKM+ 
Sbjct: 349 DSIDWGWFFFLTKPIFAVLHWLNALIGNMGWAIIGLTVLIKLLVFPLAYKSYASMAKMKE 408

Query: 385 LQPKLQDLKERFGDDRQKMGQAMMELYKKEKVNPMGGCLPILLQMPIFIALYWVLLESFE 444
           LQP+++++KE+ GDDRQK+ Q MM LYKKEKVNP  GCLPIL+Q+PIF +LY V+  + E
Sbjct: 409 LQPRMEEIKEKAGDDRQKLQQEMMALYKKEKVNPAAGCLPILIQIPIFFSLYKVIFVTLE 468

Query: 445 LRHAPFMLWIHDLSVQDP-------------------------YYILPLLMGVSMFIMQK 479
           LRHAPF     DLS  DP                           ILP+L+G+SM++ QK
Sbjct: 469 LRHAPFFGPFQDLSAPDPTSIMNLFGLLPMAAPVEGTLMATIFIGILPILLGISMWLQQK 528

Query: 480 MQPIAPTMDPMQVKMMQWMPVIFTVFFLWFPSGLVLYWLVGNIVAIIQQKII 531
           + P APT DP Q  +  WMP +F      F SGLV+YW+  N +   QQ +I
Sbjct: 529 LNP-APT-DPTQQMIFAWMPWVFMFMLGGFASGLVVYWIANNTITFTQQYLI 578