Pairwise Alignments

Query, 541 a.a., inner membrane protein, 60 kDa (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 551 a.a., membrane protein insertase, YidC/Oxa1 family, N-terminal domain protein from Dechlorosoma suillum PS

 Score =  387 bits (993), Expect = e-112
 Identities = 224/553 (40%), Positives = 321/553 (58%), Gaps = 24/553 (4%)

Query: 1   MESQRNILLIGLLFVSFLLWQQWQADKAPKPV-ATESSVVANATTNHSADVPEADTGVPA 59
           M+++R  L +       +LW  W     PK V AT ++  A A    SA +      V A
Sbjct: 1   MDNRRLFLFLIFAVSIIMLWDAWVKHNQPKDVPATAAATQAGAAPAPSATLQSGAAAVAA 60

Query: 60  AVAATQNL----ITVKTDQLDVQINPVGGDIVYAALVSHKLEQGKDQPFVLLEQTKDFTY 115
           AVAA   +    +T+ TD +   I+  GGD+V   L  +K    + +PF L  +  D  Y
Sbjct: 61  AVAAPAPVKAETVTITTDLMVADISTQGGDLVRLELPGYKSATDESKPFQLFGE--DHRY 118

Query: 116 IAQSGLIGRDGIDSSAKGRAIFAASKTEFTLADGQDSLEVPLTYVAENGVTYTKVFVFHR 175
            AQSGLIG DG+ +    + +F        + D ++ L+V L  V + GV  TKV+ F +
Sbjct: 119 SAQSGLIG-DGLPTH---KTMFKVLPGPREMGDSKE-LQVRLEAVTD-GVKVTKVYTFRK 172

Query: 176 GKFNVNIDYKINNTSAAPLQVQMYGQIKQTIK-PSESSMMMPTYRGAAFSTASVRYEKYN 234
           G F V++ Y+I+N SA  +    Y Q+ +  K P+  S M+  Y G A  T   ++ K  
Sbjct: 173 GSFLVDVGYEIHNGSAKAIAPHAYFQLARDDKAPAGESSMVSVYTGPALYTEQDKFHKLA 232

Query: 235 FEDM--GKNNLNQPTIGGWAAMLQHYFVSAWIPPATDSNTIFS---SVSAGGLANIGFRG 289
           F D+  GK  + Q    GW AM+QHYFVSA++P        F       A G   +   G
Sbjct: 233 FSDIEKGKAKVPQNADNGWVAMVQHYFVSAFVPQGKSPREFFVRKVEAPADGKPGVYSAG 292

Query: 290 AVYDVAP---GATQEISSQFYVGPKDQKALSALSDTLNLVVDYGFLWWLAVPIHWLLMFY 346
            +  VA    GA   +S   + GP+ Q  L  +++ L+LVVDYG+L  +A PI W L + 
Sbjct: 293 VIVPVAQVEAGAQGSVSVPLFAGPQIQSQLKQVAEGLDLVVDYGWLTVIAAPIFWALEWI 352

Query: 347 QSFVGNWGVAIILITLTVRGLLFPLTKAQYTSMAKMRNLQPKLQDLKERFGDDRQKMGQA 406
              VGNWG AI+++T+ ++ + FPL+ A Y SMAKMR + P+LQ +KE F DDRQ+M Q 
Sbjct: 353 HKLVGNWGWAIVVLTIALKLIFFPLSAASYKSMAKMRQVTPRLQHIKEHFADDRQRMNQE 412

Query: 407 MMELYKKEKVNPMGGCLPILLQMPIFIALYWVLLESFELRHAPFMLWIHDLSVQDPYYIL 466
           MM+LY+KEK+NP+GGCLPIL+Q+P+FIALYWVLL + E+R+AP++ WIHDLS QDP+YIL
Sbjct: 413 MMDLYRKEKINPLGGCLPILIQIPVFIALYWVLLGAVEMRNAPWVGWIHDLSAQDPFYIL 472

Query: 467 PLLMGVSMFIMQKMQPIAPTMDPMQVKMMQWMPVIFTVFFLWFPSGLVLYWLVGNIVAII 526
           P++M  +M I  ++ P  P  DP+Q K+M  MP +F   F +FP+GLVLYW+V N+++I 
Sbjct: 473 PVIMIATMVIQTRLNPTPP--DPIQAKVMMMMPFVFGFMFFFFPAGLVLYWVVNNVLSIA 530

Query: 527 QQKIIYAGLEKKG 539
           QQ  I   +E  G
Sbjct: 531 QQWQITRMIEAGG 543