Pairwise Alignments

Query, 541 a.a., inner membrane protein, 60 kDa (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 539 a.a., 60 kDa inner membrane insertion protein (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  261 bits (667), Expect = 5e-74
 Identities = 186/548 (33%), Positives = 279/548 (50%), Gaps = 36/548 (6%)

Query: 1   MESQRNILLIGLLFVSFLLWQQ------WQADKAPKPVATESSVVANATTNHSAD----- 49
           MES+R I+ I L FV  + W        W    AP+    E++  A+     SA      
Sbjct: 1   MESKRAIIAIALSFVVLVGWSYLADHMGWNGQPAPQAQQEETAPSASQAAPQSASQAAAP 60

Query: 50  VPEADTGVPAAVAATQNLITVKTDQLDVQINPVGGDIVYAALVSHKLEQGKDQPFVLLEQ 109
            P A+T  P  + +    +TV T      ++  GG + + +L  ++       P V +  
Sbjct: 61  APRAET--PVFLPSAGREVTVVTPLYKAVLHSGGGVLKHFSLTRYRTAITAGAPAVDMVD 118

Query: 110 TKDFTYIAQSGLIGRDGIDSSAKGRAIFAASKTEFTLADGQDSLEVPLTYVAE-NGVTYT 168
           T   T ++  GL+  +G  S   G+  F     + +L  GQ  +   LT+  E +GV   
Sbjct: 119 TAS-TVMSPLGLL-INGQPSWNTGQWSFDGG--DLSLGAGQSGV---LTFTGEVDGVRVV 171

Query: 169 KVFVFHRGKFNVNIDYKINNTSAAPLQVQMYGQIKQTIKPSESSMMMPTYRGAAFSTASV 228
           +   F    + ++   K+     A  +    G    T   S +       R A     S 
Sbjct: 172 RELTFSADTYLIS--EKVRLAPLADARTVRLGFTVGTGNLSPNGGQYDHTRVAWLHDGSF 229

Query: 229 RYEKYNFEDMGKNNLNQPTIGGWAAMLQHYFVSAWIPPATDSNTIFSSVSAGGLANIGFR 288
             EK +  D+ K  L    +  W A++ +YF+ A  P  T   T+   +  G       R
Sbjct: 230 S-EKTSASDLEKGVLETGALS-WGAVMSNYFLVAAAPVDTTGVTLKGKLQEGVYRVAMER 287

Query: 289 GAVYDVAPGATQEISSQFYVGPKDQKALSALSDTLNLVVDYGFLWWLAVPIHWLLMFYQS 348
           G V   A G T  ++  ++ GPKD+  L    + L   ++ G+   +A P+  +L F+  
Sbjct: 288 GDVSIPAGGETT-VACNYWFGPKDRGLLKEAPNQLAEAINLGWFSIIARPLVDMLEFFHK 346

Query: 349 FVGNWGVAIILITLTVRGLLFPLTKAQYTSMAKMRNLQPKLQDLKERFGDDRQKMGQAMM 408
           +VGN+GVAIIL+T+ ++ + +PL+   Y SM +M+ LQP LQ L+E+ GDDR+KM + MM
Sbjct: 347 YVGNYGVAIILLTVVIKLVFWPLSHKSYKSMEQMKKLQPMLQKLREKHGDDREKMNEEMM 406

Query: 409 ELYKKEKVNPMGGCLPILLQMPIFIALYWVLLESFELRHAPF--------MLWIHDLSVQ 460
            LYK  KVNP GGCLP+L+Q+P+F  LY  LL + ELRHA F        M+W+ DLS +
Sbjct: 407 RLYKTYKVNPAGGCLPMLVQIPVFFGLYQALLNAIELRHASFITHLPFTDMVWLADLSAK 466

Query: 461 DPYYILPLLMGVSMFIMQKMQPIAPTMDPMQVKMMQWMPVIFTVFFLWFPSGLVLYWLVG 520
           DPYYI P++MG +M + QK+ P AP  DP Q K+M +MPV+FT  FL FPSGLV+YWL  
Sbjct: 467 DPYYITPIVMGATMLLQQKLTP-APG-DPTQAKIMMFMPVVFTFMFLSFPSGLVVYWLCN 524

Query: 521 NIVAIIQQ 528
           N+++I QQ
Sbjct: 525 NVLSIAQQ 532