Pairwise Alignments

Query, 541 a.a., inner membrane protein, 60 kDa (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 606 a.a., 60 kDa inner membrane insertion protein (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  226 bits (577), Expect = 1e-63
 Identities = 173/585 (29%), Positives = 261/585 (44%), Gaps = 64/585 (10%)

Query: 2   ESQRNILLIGLLFVSFLLW------QQWQADKAPKPVATESSVVANATTNHSADVPEADT 55
           +++  IL   L F+  L+W      ++   D       T+S   A+      A V EA  
Sbjct: 4   QNKNLILATALSFLVILVWFLLFPPEEPVTDPNAPTQITQSGETADVALTPPAAVTEAAP 63

Query: 56  GVPAAVAATQN----LITVKTDQLDVQINPVGGDIVYAALVSHKLEQGKDQPFVLLEQTK 111
           G     AAT       + + T  L+  I+ +GG I   +L ++      D P V L    
Sbjct: 64  GAAPQTAATPTENAPRVQIDTPALEGSISLLGGRIDDLSLRNYNETLEPDSPIVRLLSPV 123

Query: 112 DF--TYIAQSGLI--GRDGIDSSAKGRAIFAASKTEFTLADGQDSLEVPLTYVAENGVTY 167
           D    Y A  G    G    D       ++     +    D      V L +   NG+ +
Sbjct: 124 DAPGAYYALYGWAPAGTLSFDDVPGANTLWTVESGDTLTVD----TPVVLRWENGNGLIF 179

Query: 168 TKVFVFHRGKFNVNIDYKINNTSAAPLQVQMYGQIKQTIKPSESSMMMPTYRGAAFSTAS 227
            +        F   +   + NT+    ++Q YG I +  +P   +  +      A +  S
Sbjct: 180 RRTLAVD-DDFMFTVTQSVENTTETDKRMQPYGIIARHGEPDTINFFVLHEGVVAMADGS 238

Query: 228 VRYEKYNFEDM----------GKNNLNQPTIGGWAAMLQHYFVSAWIP-PATDSNTIFSS 276
           +    Y  +DM           +  + Q    GW       +++  IP P     ++   
Sbjct: 239 LIESDY--DDMLDYDFVEREGARAEVEQIEQNGWIGFTDKNWMTTLIPTPGQPFTSVAKY 296

Query: 277 VSAGGLANIGFRGAVYDVAPGATQEISSQFYVGPKDQKALSALSDTLNLV-----VDYGF 331
           V    +     R     V  G T  + ++ + G K+ +A+      L +      +D+G+
Sbjct: 297 VGNADIYQTETRLPTQTVPGGQTVTVETRLFAGAKEWEAIRGYERELGIEGFIDSIDWGW 356

Query: 332 LWWLAVPIHWLLMFYQSFVGNWGVAIILITLTVRGLLFPLTKAQYTSMAKMRNLQPKLQD 391
            ++L  PI ++L      +GN GVAII++TL ++ LL PL    Y SMA+M+ LQP+++ 
Sbjct: 357 FYFLTKPIFFVLHELNLLIGNMGVAIIVLTLLIKALLLPLAWKSYVSMARMKELQPEMEK 416

Query: 392 LKERFGDDRQKMGQAMMELYKKEKVNPMGGCLPILLQMPIFIALYWVLLESFELRHAPFM 451
           LKE+ GDDRQK+  AMMELYKKEKVNP  GCLPILLQ+PIF +LY V+  + ELRHAPF 
Sbjct: 417 LKEKAGDDRQKLQVAMMELYKKEKVNPAAGCLPILLQIPIFFSLYKVIFVTIELRHAPFF 476

Query: 452 LWIHDLSVQDP-------------------------YYILPLLMGVSMFIMQKMQPIAPT 486
               DLS  DP                           ILPLL+G+SM++ QK+ P APT
Sbjct: 477 GPFQDLSAPDPTSIMNLFGLLPFASPEPGSILALIFIGILPLLLGISMWLQQKLNP-APT 535

Query: 487 MDPMQVKMMQWMPVIFTVFFLWFPSGLVLYWLVGNIVAIIQQKII 531
            DP Q  +  W+P +F      F SGL++YW+  N++   QQ  I
Sbjct: 536 -DPTQAMIFAWLPWVFMFMLGTFASGLIVYWIANNVITFAQQYFI 579