Pairwise Alignments

Query, 541 a.a., inner membrane protein, 60 kDa (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 552 a.a., protein translocase subunit yidC from Paraburkholderia bryophila 376MFSha3.1

 Score =  384 bits (987), Expect = e-111
 Identities = 208/546 (38%), Positives = 317/546 (58%), Gaps = 21/546 (3%)

Query: 1   MESQRNILLIGLLFVSFLLWQQWQADK--------APKPVATESSVVANATT--NHSADV 50
           M+ +R +L +     + +L+  WQ D         +  P  T  S     TT     AD+
Sbjct: 1   MDIKRTVLWVIFFMSAVMLFDNWQRDHGRPSMFFPSATPTKTVGSAAPGTTTPGTQPADL 60

Query: 51  PEADTGVPAAV-AATQN-LITVKTDQLDVQINPVGGDIVYAALVSHKLEQGKDQPFVLLE 108
           P  +   PA   AATQ+ L+   TD  + +I+  GG +   +LV     +  D    L +
Sbjct: 61  PATNAAAPANTPAATQSQLVKFSTDVYNGEIDTRGGTLSKLSLVKQGDGKQPDLVITLFD 120

Query: 109 QTKDFTYIAQSGLIGRDGIDSSAKGRAIFAASKTE-FTLADGQDSLEVPLTYVAENGVTY 167
           +T + TY+A++GL+G D  + +     +F     +   L     S ++      + G+  
Sbjct: 121 RTANHTYLARTGLLGGDFPNHND----VFTPLPNQPHDLTGDAKSFQLSFESPVKGGLKV 176

Query: 168 TKVFVFHRGKFNVNIDYKINNTSAAPLQVQMYGQIKQTIKPSESSMMMPTYRGAAFSTAS 227
            K + F RG + + +D KI N   AP+   +Y ++ +  +P E+     T+ G A  T  
Sbjct: 177 IKTYTFTRGSYVIGVDTKIQNVGTAPVSPSVYMELVRDDQPVETPRFSHTFIGPAVYTDQ 236

Query: 228 VRYEKYNFEDMGKN--NLNQPTIGGWAAMLQHYFVSAWIPPATDSNTIFSSVSAGGLANI 285
             ++K  F D+ KN  +  +    GW AM+QHYF SAWIP       I+       L  +
Sbjct: 237 HHFQKMTFGDIDKNKEDFTKQADNGWIAMVQHYFASAWIPQQGVKRDIYVEKIDPTLYRV 296

Query: 286 GFRGAVYDVAPGATQEISSQFYVGPKDQKALSALSDTLNLVVDYGFLWWLAVPIHWLLMF 345
           G +  V  +APG T ++S++ + GP++++ L  ++  L LV DYG++  +A P+ WLL  
Sbjct: 297 GVKQPVAAIAPGQTVDVSARLFAGPEEERMLEGIAPGLELVKDYGWVTIIAKPLFWLLEK 356

Query: 346 YQSFVGNWGVAIILITLTVRGLLFPLTKAQYTSMAKMRNLQPKLQDLKERFGDDRQKMGQ 405
             S+VGNWG AI+L+TL ++ + FPL+ A Y SMA+M+ + P++Q L+ERF  D QKM  
Sbjct: 357 IHSYVGNWGWAIVLLTLLIKAVFFPLSAASYKSMARMKAITPRMQALRERFKGDPQKMNA 416

Query: 406 AMMELYKKEKVNPMGGCLPILLQMPIFIALYWVLLESFELRHAPFMLWIHDLSVQDPYYI 465
           A+MELYK EKVNP GGCLP+++Q+P+FI+LYWVLL S E+R AP++LWIHDLS QDP++I
Sbjct: 417 ALMELYKTEKVNPFGGCLPVVVQIPVFISLYWVLLSSVEMRGAPWILWIHDLSQQDPFFI 476

Query: 466 LPLLMGVSMFIMQKMQPIAPTMDPMQVKMMQWMPVIFTVFFLWFPSGLVLYWLVGNIVAI 525
           LP+LM VSMF+  K+ P  P  DP+Q KMM +MP+ F+V F +FP+GLVLY++V N+++I
Sbjct: 477 LPVLMAVSMFLQTKLNPTPP--DPVQAKMMMFMPIAFSVMFFFFPAGLVLYYVVNNVLSI 534

Query: 526 IQQKII 531
            QQ  I
Sbjct: 535 AQQYYI 540