Pairwise Alignments

Query, 780 a.a., winged helix-turn-helix domain-containing protein from Lysobacter sp. OAE881

Subject, 1062 a.a., amidohydrolase (RefSeq) from Shewanella amazonensis SB2B

 Score = 60.8 bits (146), Expect = 4e-13
 Identities = 80/326 (24%), Positives = 125/326 (38%), Gaps = 63/326 (19%)

Query: 283 PVWSPDGRWIAFMRLSESSCSIRLVTPNARAEHEVGVCDRRSPPTFDWTPDSNGLI---- 338
           PV+SPDG++IAF    +   ++ ++  + +    V     R   +  W+PDS  L+    
Sbjct: 95  PVYSPDGKYIAFTSDQDGGDNLWVMDADGKNPRAVTKETFRLINSPAWSPDSQYLVGRKH 154

Query: 339 -FGSMSTDQGTVGLRVLNLDSGQWQPIEYPHDPDELDTDPRYSPDGRWIVFVRNAPLGDF 397
              S S   G V L  ++   G  Q  E P+D  +L  +P YSPDGR+I F ++A  G  
Sbjct: 155 FTASRSLGAGEVWLYHISGGEGV-QLTERPNDQKDLG-EPAYSPDGRYIYFSQDATPGKT 212

Query: 398 WRIPAQGGNAERLSRLRADLRGWDWSPTGRGLLFSAMVDGEYRLFRLDTSTGEARQM--G 455
           +                                    V G Y++ R DT TGE   +  G
Sbjct: 213 FHYSKDS------------------------------VAGIYKIKRYDTQTGEIEVLIEG 242

Query: 456 VDDGQAPVAARSRRAIAFVQRRPYFG-LYRVQLADGDGPGRVHVVEPLFASAARDLLPSI 514
                 P  +   + +AF++R  +   LY + LA G         E L+    RD+  + 
Sbjct: 243 TGGAIRPTPSPDGKKLAFIKRDGFQSTLYSLDLASG-------AKEKLYGELDRDMQETW 295

Query: 515 APDGRQLAFVSDRSGSNGL-WVGDVSQ------------PDTLRMMGGVRPGTRYAPAWS 561
           A  G       D+S ++ L W     Q            P  ++    V+P  RY     
Sbjct: 296 AIHGVYPTMAWDKSSNDILFWAKGKIQRLNVSSKKVTEVPFHVKTQLDVQPSVRYTQNLD 355

Query: 562 PDS---RRLLATGIDAQGRGVVQEVL 584
            D+   + L    +   G+ VV E L
Sbjct: 356 HDNFDVKMLRMAQVSPDGKHVVYEAL 381



 Score = 47.0 bits (110), Expect = 5e-09
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 22/94 (23%)

Query: 482 LYRVQLADGDGPGRVHVVEPLFASAARDLLPSIAPDGRQLAFVSDRSGSNGLWVGDVS-- 539
           +YR+    G+        E L +  A  + P  +PDG+ +AF SD+ G + LWV D    
Sbjct: 72  IYRIPAKGGEA-------EVLASGIAWQMQPVYSPDGKYIAFTSDQDGGDNLWVMDADGK 124

Query: 540 -----QPDTLRMMGGVRPGTRYAPAWSPDSRRLL 568
                  +T R++         +PAWSPDS+ L+
Sbjct: 125 NPRAVTKETFRLIN--------SPAWSPDSQYLV 150



 Score = 44.7 bits (104), Expect = 3e-08
 Identities = 46/154 (29%), Positives = 71/154 (46%), Gaps = 12/154 (7%)

Query: 380 SPDGRWIVFVRNAPLGDFWRIPAQGGNAERLSRLRADLRGWDWSPTGRGLLFSAMVDGEY 439
           SPDG++IVF     LGD +RIPA+GG AE L+   A      +SP G+ + F++  DG  
Sbjct: 58  SPDGKYIVFDL---LGDIYRIPAKGGEAEVLASGIAWQMQPVYSPDGKYIAFTSDQDGGD 114

Query: 440 RLFRLDTSTGEARQMGVDDGQAPVAARSRRAIAFVQRRPYF------GLYRVQLADGDGP 493
            L+ +D      R +  +  +   +        ++  R +F      G   V L    G 
Sbjct: 115 NLWVMDADGKNPRAVTKETFRLINSPAWSPDSQYLVGRKHFTASRSLGAGEVWLYHISGG 174

Query: 494 GRVHVVEPLFASAARDL-LPSIAPDGRQLAFVSD 526
             V + E    +  +DL  P+ +PDGR + F  D
Sbjct: 175 EGVQLTER--PNDQKDLGEPAYSPDGRYIYFSQD 206



 Score = 30.8 bits (68), Expect = 4e-04
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 6/58 (10%)

Query: 237 LSPDAGLVAYVAIPEGQRGTAIMVQTTEQTQPRQLTRPPEGTDDASPVWSPDGRWIAF 294
           +SPD   V Y A+ +      + +++  + +  +LT+  +G  +  P WS DG+ +AF
Sbjct: 369 VSPDGKHVVYEALGK------LWLKSLPEGKVTRLTKLDDGISELYPTWSRDGKQLAF 420



 Score = 28.1 bits (61), Expect = 0.003
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 234 SPALSPDA----GLVAYVAIPEGQRGTAIMVQTTEQTQPRQLTRPPEGTDDASPVWSPDG 289
           SPA SPD+    G   + A      G   +   +     +   RP +  D   P +SPDG
Sbjct: 139 SPAWSPDSQYLVGRKHFTASRSLGAGEVWLYHISGGEGVQLTERPNDQKDLGEPAYSPDG 198

Query: 290 RWIAF 294
           R+I F
Sbjct: 199 RYIYF 203