Pairwise Alignments

Query, 1389 a.a., DNA-directed RNA polymerase subunit beta from Lysobacter sp. OAE881

Subject, 1345 a.a., DNA-directed RNA polymerase, beta subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 1850 bits (4792), Expect = 0.0
 Identities = 942/1384 (68%), Positives = 1120/1384 (80%), Gaps = 46/1384 (3%)

Query: 9    YSFTEKKRIRKDFGKRKSILEVPFLLAIQVDSYREFLQEHTDPAKRADRGLHAALKSVFP 68
            YS++EKKRIRKDFGKR  +L++P+LL+IQ+DS+++F    TD     +RGL AA +SVFP
Sbjct: 3    YSYSEKKRIRKDFGKRPQVLDIPYLLSIQLDSFKKF----TDQDPTGERGLEAAFRSVFP 58

Query: 69   IVSYSGNAALEYVGYKLGEPPFDERECRNRGLSYGAPLRVTVRLVIYDRESSTKAIKYVK 128
            I S+SGN+ L+YV YKLGEP FD +EC+ RG++Y APLRV +R+V+YDRE++   +K +K
Sbjct: 59   IKSFSGNSELQYVSYKLGEPVFDVKECQIRGVTYSAPLRVKLRMVLYDREAAAGTVKDIK 118

Query: 129  EQEVYMGEIPLMTENGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARIIP 188
            EQEVYMG+IPLMT+NGTF++NGTERVIVSQLHRSPGVFFDHDRGKTHSSGK+LY+ARIIP
Sbjct: 119  EQEVYMGDIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNARIIP 178

Query: 189  YRGSWLDFEFDPKDALFTRIDRRRKLPVTVLLRALGYNNEEMLREFFEVNTFHIDPNEGV 248
            YRGSWLDFEFDPKDALF RIDRRRKLP T++LRAL Y+ +E+L  FFE   F I  +  V
Sbjct: 179  YRGSWLDFEFDPKDALFVRIDRRRKLPATIILRALEYSTQEILDLFFERVEFKIKKDTLV 238

Query: 249  QLELVPERLRGETLNFDLADGE-KVIVEAGRRITARHVKQLEQAGVAALAVPDEYLVGRI 307
             + LVPERLRGET ++D+ D E  V+VEAGRR+TARH++QLE+     L VP EY+VG+ 
Sbjct: 239  -MTLVPERLRGETASYDIKDAEGTVLVEAGRRVTARHIRQLEKTNTTELEVPVEYIVGKY 297

Query: 308  LSHDVVDTKSGELLATANDEITEDHLVAFRKAGIETVGTLWVNDLDRGAYLSHTLRIDAT 367
             + D +D  +GE+L +AN EI+ + L     AGI+ + TL++N+LD GAY+S TLRID T
Sbjct: 298  AAQDYIDPDTGEVLVSANSEISLEDLAKLSLAGIKELSTLYINELDHGAYISDTLRIDPT 357

Query: 368  KTQLEALVEIYRMMRPGEPPTKDAAQNLFHNLFFTFERYDLSAVGRMKFNRRLGRKETEG 427
              +LEALVEIYRMMRPGEPPTKDAA+ LF NLFF+ ERYDLS VGRMKFNRRL   + EG
Sbjct: 358  TNRLEALVEIYRMMRPGEPPTKDAAEALFQNLFFSEERYDLSKVGRMKFNRRLSIPDDEG 417

Query: 428  ASVLYDAKYFAERKDEESVRLRGECGNTSDILDVIRVLTEIRNGRGTVDDIDHLGNRRVR 487
            + VL                      +  DI+ V++ +  IRNG   VDDIDHLGNRR+R
Sbjct: 418  SGVL----------------------SKEDIVAVMKNIIHIRNGFDEVDDIDHLGNRRIR 455

Query: 488  SVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQLSQF 547
            SVGEMAEN FRVGLVRVERAV+ERLS+ +   L PQ+LINAKP++AA+KEFFGSSQLSQF
Sbjct: 456  SVGEMAENQFRVGLVRVERAVRERLSLGDLNELMPQDLINAKPISAAVKEFFGSSQLSQF 515

Query: 548  MDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIGLINS 607
            MDQNNPLSEVTHKRR+SALGPGGLTRERAGFEVRDVHPTHYGR+C IETPEGPNIGLINS
Sbjct: 516  MDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINS 575

Query: 608  LAVFARTNKYGFLETPYRKVVDGRVTDDVEYLSAIEENEYVIAQANAPQDEKGTITAQFV 667
            LA FARTN YGFLETPYRKVVDG +TD+VEYLSAIEE  YVIAQAN   D +G +  + +
Sbjct: 576  LASFARTNSYGFLETPYRKVVDGVITDEVEYLSAIEEGRYVIAQANIEVDSEGRMVEEQI 635

Query: 668  ACRYQGESMLRPPNEIHFMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQAVPTLR 727
            ACR++GES     ++I +MDVSP Q +SVAA+L+PFLEHDDANRALMGANMQRQAVPTLR
Sbjct: 636  ACRHKGESTFMRASDIQYMDVSPQQIISVAASLIPFLEHDDANRALMGANMQRQAVPTLR 695

Query: 728  AQKPLVGTGIERAVARDSGVTVNARRGGVIEQIDAGRIVVKVNESEIVGETDAGVDIYTL 787
            ++KPLVGTGIER +A DSGV V A+RGGVI+ +DA RIVVKVNE E+    +AG+DIY L
Sbjct: 696  SEKPLVGTGIERTLAVDSGVVVAAKRGGVIDYVDASRIVVKVNEDEL-RPGEAGIDIYNL 754

Query: 788  IKYTRSNQNTCINQRPLVNVGDVVARGDVLADGPSTDIGELALGQNMLVAFMPWNGYNFE 847
             KYTRSNQNTCINQRP  +VG+ V RGDVLADGPSTD+G+LALGQNM +AFMPWNGYNFE
Sbjct: 755  TKYTRSNQNTCINQRPCCSVGEPVVRGDVLADGPSTDLGDLALGQNMRIAFMPWNGYNFE 814

Query: 848  DSILLSERVVEQDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLDESGVVYI 907
            DSIL+SERV ++DR+TTIHI+EL+C+ARDTKLG EEI+ADIPNV E AL++LDESG+VYI
Sbjct: 815  DSILISERVAQEDRFTTIHIQELSCIARDTKLGSEEITADIPNVGESALSKLDESGIVYI 874

Query: 908  GAEVRAGDILVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVIDVQV 967
            GAEV+ GDILVGKVTPKGE+QLTPEEKLLRAIFGEKASDVKDSSLRVP  + GT+IDVQV
Sbjct: 875  GAEVKGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVKGTIIDVQV 934

Query: 968  FTRDGIEKDKRARQIEESEIRRVKKDFDDQFRILEAAIYDRLKSQLVGRIANGGGGLKKG 1027
            FTRDG+EKDKRA +IEE  I + +KD  ++F+ILE  +  R ++ L+        G  + 
Sbjct: 935  FTRDGVEKDKRAIEIEEMHIAQARKDLGEEFKILEEGVLSRARNLLL------SAGFSEA 988

Query: 1028 DTVTSLVLDGLSRKDWFTLRMKDDEAVEA-IERAQKQIEVHKAEFEKRFADKRGKITQGD 1086
                   +  L RKD   +++ DDEA +  +E+  +Q E  KA+F+K+F  KR KITQGD
Sbjct: 989  Q------IAALPRKD-VLVQVIDDEAKQTELEQLAEQHEELKADFDKKFEIKRRKITQGD 1041

Query: 1087 DLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSTIVPVQDMPYAADGQTVDIVLNP 1146
            DLAPGVLK+VKV+LAVKR IQPGDKMAGRHGNKGV+S I P++DMPY   G  VDIVLNP
Sbjct: 1042 DLAPGVLKIVKVYLAVKRTIQPGDKMAGRHGNKGVISKINPIEDMPYDEQGNPVDIVLNP 1101

Query: 1147 LGVPSRMNIGQILEVHLGWAAKGLGQKIQRMLEAQ--QAIGELRKFLNDIYNHDNSVVGE 1204
            LGVPSRMNIGQ+LEVHLG AAKG+G KI  MLE Q  + + E+R ++  +Y   +  V +
Sbjct: 1102 LGVPSRMNIGQVLEVHLGAAAKGIGHKIAAMLEDQREKGLAEVRNYIKQVYELGDE-VQQ 1160

Query: 1205 RVDLTQFTDEELLRLAKNLTDGVPMATPVFDGAAESEIKRMLELADLPSSGQTELFDGRT 1264
            RVD+  FTD+ELLRLA NL  G+P+ATP FDGA E EIK+MLELA LP+SGQ +LFDGRT
Sbjct: 1161 RVDIDSFTDDELLRLANNLKGGIPVATPAFDGAKEKEIKQMLELAGLPTSGQLKLFDGRT 1220

Query: 1265 GEAFERKVTVGYMHMLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWA 1324
            G  FER VTVGYM+MLKLNHLVDDKMHARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWA
Sbjct: 1221 GNEFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWA 1280

Query: 1325 LEAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEYEMVAGMPESFNVLVKEIRSLAINM 1384
            LEAYGAAYTLQEMLTVKSDDV GR QMYKNIVDG ++M  GMPESFNVL+KEIRSL IN+
Sbjct: 1281 LEAYGAAYTLQEMLTVKSDDVNGRTQMYKNIVDGNHQMQPGMPESFNVLLKEIRSLGINI 1340

Query: 1385 ELEE 1388
            EL++
Sbjct: 1341 ELDQ 1344