Pairwise Alignments

Query, 1389 a.a., DNA-directed RNA polymerase subunit beta from Lysobacter sp. OAE881

Subject, 1372 a.a., DNA-directed RNA polymerase, beta subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 1416 bits (3665), Expect = 0.0
 Identities = 741/1384 (53%), Positives = 965/1384 (69%), Gaps = 41/1384 (2%)

Query: 16   RIRKDFGKRKSILEVPFLLAIQVDSYREFLQEHTDPAKRADRGLHAALKSVFPIVSYSGN 75
            ++ K FGK    L +P LL +QVDSY +FLQE     +R D GL    +SVFPI  ++  
Sbjct: 3    QLTKKFGKIDVSLPIPHLLNLQVDSYVKFLQEGATE-RRHDEGLEGVFRSVFPIEDFNRT 61

Query: 76   AALEYVGYKLGEPPFDERECRNRGLSYGAPLRVTVRLVIYD--RESSTKAIKYVKEQEVY 133
            A+LE+V Y++GEP +D+ EC ++GL+Y AP+R+ VRLV+YD   +S  + I+ +KEQE+Y
Sbjct: 62   ASLEFVSYEVGEPKYDQPECISKGLTYEAPIRIKVRLVVYDVDEDSGNRTIRDIKEQEIY 121

Query: 134  MGEIPLMTENGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARIIPYRGSW 193
             G +PLMTE GTFI+NGTERVIV+QL RSPG+ F+HD GKTHSS K+LYS RIIP RGSW
Sbjct: 122  FGTLPLMTEKGTFIINGTERVIVNQLQRSPGIIFEHDSGKTHSSRKVLYSCRIIPMRGSW 181

Query: 194  LDFEFDPKDALFTRIDRRRKLPVTVLLRALGYNNEEMLREFFEVNTFHIDPNEGVQLELV 253
            LDF+FD KD L+ RIDRRRK+P T+L +A+G +  ++L  F++   + +DP   +  E+ 
Sbjct: 182  LDFDFDHKDILYVRIDRRRKMPATILFKAMGMSKTDILDYFYKKEFYRLDPMGRLMWEVQ 241

Query: 254  PERLRGETLNFDLADGEK-VIVEAGRRITARHVKQLEQAGVAALAVPDEYLVGRILSHDV 312
             +  R ++   D+ DG+   IV+AG+ IT R  + + +AG+  + V  + + G  L+ D+
Sbjct: 242  KDMYRKDSAFVDIEDGKGGTIVKAGKPITKRAWRLISEAGLETIEVAPDTIEGMFLAEDI 301

Query: 313  VDTKSGELLATANDEITEDHLVAFRKAGIETVGTLWVNDLDRGAYLSHTLRIDATKTQLE 372
            V+  +GE+LA A DEIT   +   R+AGI  +  L    L+  + L  TL +D T     
Sbjct: 302  VNPATGEVLAEAADEITASLVENLREAGISRLPVLHTKGLETSSSLRDTLVLDKTPDMEA 361

Query: 373  ALVEIYRMMRPGEPPTKDAAQNLFHNLFFTFERYDLSAVGRMKFNRRLGRKETEGASVLY 432
            A VEIYR +RP  PPT + A + F NLF + + YDLS VGR K N+RLG  ++     L 
Sbjct: 362  AQVEIYRRLRPSSPPTPEIAASFFDNLFRSADYYDLSPVGRYKLNQRLGIDQSVDLRTLT 421

Query: 433  DAKYFAERKDEESVRLRGECGNTSDILDVIRVLTEIRNGRGTVDDIDHLGNRRVRSVGEM 492
            D                       DIL  IRVL  +++  G  DDIDHLGNRRVR VGE+
Sbjct: 422  D----------------------DDILRAIRVLLHLKDSHGPADDIDHLGNRRVRPVGEL 459

Query: 493  AENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQLSQFMDQNN 552
             EN +R+GLVR+ERA+KER+S+ E   L P +LIN KPVAA +KEFFG+SQLSQFMDQ N
Sbjct: 460  VENQYRIGLVRMERAIKERMSLQEVSTLMPHDLINPKPVAAVLKEFFGTSQLSQFMDQTN 519

Query: 553  PLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIGLINSLAVFA 612
             LSEVTHKRR+SALGPGGLTRERAGFEVRDVH +HYGR+C IETPEGPNIGLI SL  +A
Sbjct: 520  ALSEVTHKRRLSALGPGGLTRERAGFEVRDVHTSHYGRICPIETPEGPNIGLIVSLTTYA 579

Query: 613  RTNKYGFLETPYRKVVDGRVTDDVEYLSAIEENEYVIAQANAPQDEKGTITAQFVACRYQ 672
            + N +GF+ETPYR + +G +TD++++L A  E   V+AQANA  D  G +  ++V  R +
Sbjct: 580  KVNDFGFIETPYRIIREGALTDEIKFLDASREQGEVVAQANAAVDADGKLADEYVTARVR 639

Query: 673  GESMLRPPNEIHFMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQAVPTLRAQKPL 732
            G+ ++   +E+  MD+SP Q VS++AAL+PFLEHDDANRALMG+NMQRQAVP LR++KP+
Sbjct: 640  GDVLMSHRDEVTLMDISPSQMVSISAALIPFLEHDDANRALMGSNMQRQAVPLLRSEKPI 699

Query: 733  VGTGIERAVARDSGVTVNARRGGVIEQIDAGRIVVKVNESEIVGETDAGVDIYTLIKYTR 792
            VGTG+E  VARDSG  + A   G++   DA RI+V       +     GV  Y L KY +
Sbjct: 700  VGTGMEGDVARDSGACILAEGPGIVRYADATRIIVSYENG--LYPDRGGVRAYDLQKYHK 757

Query: 793  SNQNTCINQRPLVNVGDVVARGDVLADGPSTDIGELALGQNMLVAFMPWNGYNFEDSILL 852
            SNQN+C  QRP  + G +V +GDVLADGP  + GELALG+N++VAFMPW GYNFEDSIL+
Sbjct: 758  SNQNSCFGQRPTCHPGQIVKKGDVLADGPGIEDGELALGKNLVVAFMPWCGYNFEDSILI 817

Query: 853  SERVVEQDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLDESGVVYIGAEVR 912
            SERVV++D +T+IHIEE   VARDTKLGPEEI+ DIPNV E  L  LD SG++ IGA V+
Sbjct: 818  SERVVKEDVFTSIHIEEFEVVARDTKLGPEEITRDIPNVGEDMLRNLDGSGIIRIGASVK 877

Query: 913  AGDILVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVIDVQVFTRDG 972
              DILVGK+TPKGE+QLTPEEKLLRAIFG+KA DVK++SL+VPPG++GT+IDV+VF R  
Sbjct: 878  PDDILVGKITPKGETQLTPEEKLLRAIFGDKARDVKNTSLKVPPGIEGTIIDVKVFNRRS 937

Query: 973  IEKDKRARQIEESEIRRVKKDFDDQFRILEAAIYDRLKSQLVGR-IANGGGGLKKGDT-- 1029
             EKD+R R IE+ E  R+ K   D  R L  A+ DRL   LVG+ IA    G +KG+   
Sbjct: 938  GEKDERTRNIEDYETARIDKKEQDHVRALGDALRDRLADTLVGKQIAVTLPGKRKGEVLA 997

Query: 1030 -----VTSLVLDGLSRKDWFTLRMKDDEAVEAIERAQKQIEVHKAEFEKRFADKRGKITQ 1084
                 +T  +LD L  K    L  K  E  E ++ A +  +   A  +  +  KR K+T+
Sbjct: 998  EAGAPMTRELLDALPVKRLAGL-FKSREVDEMVDTALEDYDRQVAFLKGIYDSKREKVTE 1056

Query: 1085 GDDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSTIVPVQDMPYAADGQTVDIVL 1144
            GDDL PGV+KMVKV +AVKR++  GDKMAGRHGNKGVVS I+P +DMP+ ADG+ VDIVL
Sbjct: 1057 GDDLPPGVIKMVKVHIAVKRKLNVGDKMAGRHGNKGVVSCILPEEDMPFFADGRPVDIVL 1116

Query: 1145 NPLGVPSRMNIGQILEVHLGWAAKGLGQKIQRMLEAQQAIGELRKFLNDIYNHDNSVVGE 1204
            NPLGVPSRMNIGQI+E HLGW AK LG+++  ML++  A+  LR  + D++   ++ + +
Sbjct: 1117 NPLGVPSRMNIGQIMETHLGWGAKELGRQLAEMLDSGAAMATLRHEVKDVFR--SATIAK 1174

Query: 1205 RVDLTQFTDEELLRLAKNLTDGVPMATPVFDGAAESEIKRMLELADLPSSGQTELFDGRT 1264
             VD  +  DE   +    L  G+   TPVFDGA+E +I   +E A +   G+T L+DGRT
Sbjct: 1175 LVD--EMDDETFRKAVSKLRTGIVTKTPVFDGASEEDIWSWIERAGMDGDGKTVLYDGRT 1232

Query: 1265 GEAFERKVTVGYMHMLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWA 1324
            G+ F  +VT G M++LKL+HLVD+K+HARSTGPYSLVTQQPLGGKAQFGGQR GEMEVWA
Sbjct: 1233 GDKFYNRVTTGVMYILKLHHLVDEKIHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWA 1292

Query: 1325 LEAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEYEMVAGMPESFNVLVKEIRSLAINM 1384
            LEAYGA+Y LQE LTVKSDDV GR +MY+ IV G+  + AG+PESFNVLVKE+ SL +N+
Sbjct: 1293 LEAYGASYLLQEFLTVKSDDVTGRVKMYEKIVKGDNFLEAGLPESFNVLVKELMSLGLNV 1352

Query: 1385 ELEE 1388
             L +
Sbjct: 1353 TLHQ 1356