Pairwise Alignments

Query, 613 a.a., selenocysteine-specific translation factor from Klebsiella michiganensis M5al

Subject, 673 a.a., selenocysteine-specific translation elongation factor (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  484 bits (1247), Expect = e-141
 Identities = 267/627 (42%), Positives = 380/627 (60%), Gaps = 16/627 (2%)

Query: 1   MIIATAGHVDHGKTTLLQAITGINADRLPEEKARGMTIDLGYAYWPQPDGRVLGFIDVPG 60
           MI+ TAGHVDHGK+TL++A+TG+N DRLPEEK RGMTIDLGYA+ P  DG  L FIDVPG
Sbjct: 1   MIMVTAGHVDHGKSTLIRALTGMNTDRLPEEKRRGMTIDLGYAFMPLRDGTRLAFIDVPG 60

Query: 61  HEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGKPTLTVALTKADRVETA 120
           HEKF++NML GV  + HALLV+ACDDGVM QTREHL IL L    +LT+ LTK D V+  
Sbjct: 61  HEKFINNMLVGVSHVRHALLVLACDDGVMPQTREHLQILALLPLNSLTLVLTKRDLVDDQ 120

Query: 121 RVEEVKAEAEAALAEFGFTGATLFTVAATEG--LGIAGLRDHLLQLSARAHPQHQ---RF 175
              ++ +E    LAE+G   + +F V A++    G+  L+ H+L ++ +   Q +    F
Sbjct: 121 TAAKLASEGITLLAEYGIEASGVFEVCASDAGDAGVETLKQHILDIAEQQSTQAEDASSF 180

Query: 176 RLAIDRAFTVKGAGLVVTGTALSGEVNVGDTLWLTGVDKPMRVRGLHAQNQPVAKAWAGQ 235
           R+ +DRAF+VKG G VVTGT +SG V VGD+L+ +G    +RVRG+H Q   V +A +G 
Sbjct: 181 RMTLDRAFSVKGVGCVVTGTVISGSVCVGDSLYSSGQKAKLRVRGIHCQGMEVHRALSGT 240

Query: 236 RIALNIVGDAQKEDLNRGDWLLAVPPPEASERVIVELQCHTPLSQWQPLHIHHAASHITG 295
           R+ALN+ G        RGDWL ++P  +   R +V ++   PL+ WQ +H HH A H  G
Sbjct: 241 RVALNLTGVDNHRAPARGDWLSSLPQADLCARPVVHIRSFEPLTHWQNVHCHHGADHTLG 300

Query: 296 RVSLLEGA------LAELVLDTPLRLADNDRLVLRDISARLTLAGARVVTLNPPRRGKRK 349
           RVSLL+ A      LAE+VLD PL L  +D +VLR I  + TL   RV+ L    R KR 
Sbjct: 301 RVSLLDEADGQGRYLAEIVLDKPLLLCQDDPIVLRHIGGKQTLGAGRVLALKVSNRKKRT 360

Query: 350 PEYLQWLHALAAAQGDDVQALDIHLQRDAVRLDDFAWARQLSDEGLKALINRPDYLQAGN 409
           PE +  L  LA    + V  L +  Q +A+ +D+  W  QL+DEGL A++ +    + G 
Sbjct: 361 PERVSKLQQLAQLT-NPVNVLALLGQSEALSIDEIRWRWQLTDEGLAAMLAQAGLTRIGA 419

Query: 410 SLLSAPLAARWQRKLLDALARYHDQHRDEPGPGRERLRRIALPMEDEALVLLLIEQMRES 469
             LS  L  + +++ +D L  YH +H D+ G GR RL+R++  +    L   +++ + + 
Sbjct: 420 YGLSTQLLEQEKQQFIDLLREYHQEHPDQLGLGRNRLQRMSHSVLPSELANKVLDSLCQE 479

Query: 470 GTVHSHHGWLHLPEHKAGFTDEQQAIWQRVVGLFADE--PWWVRDLAREANVEESLMRAV 527
           G +      L L +H+     E Q  WQR+    A +  P WV ++    ++E + +R +
Sbjct: 480 GQMALRGALLQLADHRIVLDSEAQQCWQRLAPWLAQQTSPVWVTEMGEYLDLEPAKLRLL 539

Query: 528 LRQAAQQGMITAIVKDRYYRNDRIVAFAKMIRELDLERGSTCAADFRDTLNVGRKLAIQI 587
             Q  QQG ITA+VKDRY  ++++  +A ++RE     G    A+F+D + +GRK++IQ+
Sbjct: 540 CFQLVQQGFITAVVKDRYLLSEQLCHYANLVREHVDTHGKLETAEFKDMIGLGRKVSIQL 599

Query: 588 LEYFDRIGFTRR--RGNDHILRDKALF 612
           LE+FDR GFTRR  R N   +RD  LF
Sbjct: 600 LEFFDRSGFTRRKFRSNSREIRDGELF 626