Pairwise Alignments

Query, 627 a.a., sigma-54-dependent Fis family transcriptional regulator from Klebsiella michiganensis M5al

Subject, 471 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas fluorescens FW300-N1B4

 Score =  233 bits (595), Expect = 1e-65
 Identities = 133/343 (38%), Positives = 205/343 (59%), Gaps = 18/343 (5%)

Query: 287 LSQESTLWQNSVNKKSKLRGFSTTWSFDDIIGQSPAILDVIKKAKLCARHELPIHILGDT 346
           L +  ++ +   + +S LR   T ++F   IG S A L+V ++A+  A  E P+ +LG+T
Sbjct: 129 LKRYLSMQEELASTRSLLRARQTKYNFAHFIGTSTASLEVKRRARRSASAESPVLLLGET 188

Query: 347 GTGKELFAQSIHNHSARSHSPFIAINCAAIPEGILESELFGYADGAFTSARKGGKPGVFE 406
           GTGKEL AQ+IH  S R+H  F++IN AAIPE +LE+E FG A GAFT A + G+ G  +
Sbjct: 189 GTGKELLAQAIHGASPRAHKAFVSINSAAIPESLLEAEFFGTAPGAFTGADRKGRTGKLQ 248

Query: 407 MAMNGTVFIDEISEAPLSVQVKLLRVLQEKQFSRLGGDTLITADFRLITASNKDLRPLVA 466
           +A  GT+F+DEI + PL +Q KLLRVLQEK+F  +G + +I +D R+I A++ DL   + 
Sbjct: 249 IAQGGTLFLDEIGDMPLPLQSKLLRVLQEKEFEPVGSNEVIQSDVRVIAATSTDLEAAIK 308

Query: 467 SGEFRQDLYYRINILELSLPALCQRPGDIMPLIQHLLHQQGKQITFTPDAVDFLHGYRWP 526
            GEFR DLYYR+N+L + +P L  R  D+  L + +L +   Q    P+A+D L  + WP
Sbjct: 309 RGEFRADLYYRLNVLPIQVPPLRDRLDDLPALSEAILEELRSQHELNPEALDLLSQHAWP 368

Query: 527 GNIRELQAVIYRLIVLVDIDRVSKEILLQVSQISPDDDNEGSHLPATGV-------TSDE 579
           GNIREL+ V+ R  +L D      +++L V  I       GS +P   V        + E
Sbjct: 369 GNIRELRNVLERAALLSD------DLMLNVGDIRA---AIGSFIPVQRVAPLAIEPVAHE 419

Query: 580 T--DLLKKQEKRLITHVIEKTDGDRTKASVMLGISPTTLWRKL 620
           T  +  ++ +++LI   + +  G   +A+  LG+  +TL++K+
Sbjct: 420 TFSEARERFDRQLIETALAQCGGKVIEAAARLGLGRSTLYKKM 462