Pairwise Alignments

Query, 314 a.a., tRNA pseudouridine(55) synthase from Klebsiella michiganensis M5al

Subject, 317 a.a., tRNA pseudouridine synthase B (RefSeq) from Shewanella sp. ANA-3

 Score =  411 bits (1056), Expect = e-119
 Identities = 200/306 (65%), Positives = 247/306 (80%)

Query: 5   RRRGRDVHGVLLLDKPQGASSNDVLQKVKRLYNANRAGHTGALDPLATGMLPICLGEATK 64
           R +GR + G++LLDK  G SSN  LQ+VKR +NAN+AGHTGALDPLATGMLP+CLGEATK
Sbjct: 4   RSKGRFIDGIVLLDKATGMSSNFALQRVKRFFNANKAGHTGALDPLATGMLPVCLGEATK 63

Query: 65  FSQYLLDSDKRYRVIAKLGQRTDTSDADGQVVEERPLAFSPEQLAAALDGFRGETQQIPS 124
           FSQ+LLDSDKRY V AKLGQRTDTSD+DG+VV+ RPL F+  QL +AL+ FRG+TQQ+PS
Sbjct: 64  FSQHLLDSDKRYLVTAKLGQRTDTSDSDGEVVQTRPLEFTEAQLMSALEHFRGDTQQVPS 123

Query: 125 MYSALKYQGKKLYEYARQGIEVPRESRPITVYELLFIRHEGSELELEIHCSKGTYIRTII 184
           MYSALKYQG+ LY+YAR+GIEVPRE+RPITV+EL FI  EG EL L+IHCSKGTYIRTII
Sbjct: 124 MYSALKYQGQPLYKYAREGIEVPREARPITVFELNFIGLEGDELTLDIHCSKGTYIRTII 183

Query: 185 DDLGEKLGCGAHVTFLRRLAVSKYPVERMVTLEQLQALVEQANAQDIPAAQLLDPLLMPM 244
           DDLGE LGCGAHV  LRR  V+ YP ++MVTLEQL+ALV +A  + +  + LLD LL+PM
Sbjct: 184 DDLGEMLGCGAHVIMLRRTQVAHYPYDKMVTLEQLEALVAKAQEEQLDPSSLLDSLLLPM 243

Query: 245 DSPASDYPLINIPETSAVYFKNGNPVRTSGAPLQGLVRVTEGAEEKFLGMGEIDDEGRVA 304
           D+  +D+P +N+P+ SA Y   G  VR SG     LVR+T G E +F+G+GE++ +G +A
Sbjct: 244 DTAVADFPEVNVPDASAAYLMQGQAVRVSGLVADTLVRITLGTERRFVGIGEMNQDGLLA 303

Query: 305 PRRLVV 310
           P+RLVV
Sbjct: 304 PKRLVV 309