Pairwise Alignments

Query, 653 a.a., DEAD/DEAH family ATP-dependent RNA helicase from Klebsiella michiganensis M5al

Subject, 623 a.a., ATP-dependent RNA helicase DeaD (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  543 bits (1400), Expect = e-159
 Identities = 313/650 (48%), Positives = 420/650 (64%), Gaps = 44/650 (6%)

Query: 1   MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAF 60
           M+  E TF +LGL   +L AL++LGYEKP+PIQ+  I  L+ G+D+LG AQTG+GKT AF
Sbjct: 1   MSSDERTFRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAF 60

Query: 61  SLPLLNNLDPELRAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120
           +LPLLN +  +   PQILVLAPTRELAVQVAEA + ++K M+  +V+ +YGGQ    QL 
Sbjct: 61  ALPLLNKVTSQT-TPQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLN 119

Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180
           AL++GPQ++VGTPGR++DH++RGTL L  L  LVLDEADEML+MGFI+D+E I+   P  
Sbjct: 120 ALKRGPQVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPPQ 179

Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGMRKNEALVRFL 240
            Q ALFSATMPE I+R+  + +K    + I +S TT   I Q +       K EALVR L
Sbjct: 180 RQLALFSATMPEQIKRVANKHLKNATNISIAASHTTVDSIEQRFVQVSQHNKLEALVRVL 239

Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQSLREQTLERLKDGRLDILI 300
           E E+ +  IIFVRT+N+ +E+AE LE  GY+S+ L+GDMNQ  RE+ +E+LK+G+LDILI
Sbjct: 240 EVENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKNGKLDILI 299

Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360
           ATDVAARGLDVERI  VVNYDIP D+E+YVHRIGRTGRAGR G A+LFV +RE R+LR I
Sbjct: 300 ATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTI 359

Query: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPSAEGEELD 420
           ER     I  +++P+ E + +RRL +   ++ Q + ++DL+  R  +A++    +  E+D
Sbjct: 360 ERATNSRISPMKVPSPETVAERRLSRLGEQLAQTM-NNDLEFMREAVAQL---CQQLEVD 415

Query: 421 VETLAAALLKMAQGERPLILPPDAPMRPKREFRDRDDRFERRGDRNDRG-PRGDRPERSG 479
            + LAAALL   Q ERPL L       P  + R RD+R ER    +DRG  RG+R  RS 
Sbjct: 416 TDLLAAALLHQVQQERPLQL-------PAIQERVRDERSERSERGSDRGAERGER--RSR 466

Query: 480 EDRP-------KRERRDVGDMEL--YRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIK 530
           E RP           +D  D+++  Y I+VGR++GV V +IVGAIANE +I SRYIG I+
Sbjct: 467 ESRPMPASLGSAEALKDNPDLKMCRYVIDVGRENGVGVGNIVGAIANEANIDSRYIGAIQ 526

Query: 531 LFGSHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPRPERSGERRGGGERREGG 590
           L+ S +T++LP GMP +VLQH  + R+  KP+N++  GD        G R     R +  
Sbjct: 527 LYDSVTTVDLPDGMPKDVLQHLKKVRVCGKPLNIREAGDQVFVDSGRGARSDRRPRSD-- 584

Query: 591 RSFGGGERREGRGFGGERREGGRSEGRRFSGERREGGRAPRRDDASAPRR 640
                             R  G  + R  SG++    R PR D  +  RR
Sbjct: 585 ------------------RPAGDRKPRAASGDKPFADRKPRSDKPAGERR 616