Pairwise Alignments

Query, 577 a.a., ssDNA exonuclease RecJ from Klebsiella michiganensis M5al

Subject, 574 a.a., Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) from Acidovorax sp. GW101-3H11

 Score =  483 bits (1243), Expect = e-141
 Identities = 266/560 (47%), Positives = 356/560 (63%), Gaps = 15/560 (2%)

Query: 20  ADLPPLLQRLYASRGVRSAQELERGVKGMLPWSQ---LTGVEKAVEILYGAFKQGLHIVV 76
           A + PLL RLYA+RGVR+ +EL+ G+  +LP      L G++ A  +L  A  Q   +V+
Sbjct: 19  AGVHPLLARLYAARGVRAHEELDDGLGRLLPPGGDLGLKGIDAAARLLADAMAQNQRLVI 78

Query: 77  VGDFDADGATSTALSVLALRALGYGNVSYLVPNRFEDGYGLSPEVVDQAHARGAQLIMTV 136
           V D+D DGAT+ A+ V  LR LG  NV YLVP+R  DGYGL+P +  +   RGA +++TV
Sbjct: 79  VADYDCDGATACAVGVRGLRLLGARNVDYLVPDRVTDGYGLTPPIARRVAERGADVLITV 138

Query: 137 DNGISSHAGVDHAHALGIPVLVTDHHLPGDSLPAAEAIINPNLRDCEFPSKSLAGVGVAF 196
           DNGI+S  GV  A ALG+ VLVTDHHLPG +LPAA+AI+NPN   C F SKS+AGVGV F
Sbjct: 139 DNGIASVEGVAEAKALGLQVLVTDHHLPGPALPAADAIVNPNQPGCPFESKSMAGVGVMF 198

Query: 197 YLMLALRTFLRDKGWFEERGIAPPNLADLLDLVALGTVADVVPLDANNRILTWQGLSRIR 256
           Y +LALR  LR +G F+    + P L  LL LVALGTVADVV LDANNR L  QGL RIR
Sbjct: 199 YTLLALRAELRARGVFDVG--SQPKLDPLLTLVALGTVADVVKLDANNRRLVAQGLKRIR 256

Query: 257 AGKCRPGIKALLEIANRDPQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNTGEAR 316
            G+   GI AL   A R        D GFALGPR+NAAGRL DM++G+  LL D+ G A 
Sbjct: 257 MGQMPAGIAALFHAAGRKAPAATTFDFGFALGPRINAAGRLADMTLGIECLLTDDAGRAA 316

Query: 317 VLANELDALNQTRKEIEQGMQAEALTLCEKLERSGETLPGGLAMYHPQWHQGVVGILASR 376
            LA+ LD++N+ R+EIE GM+ +A+ + E L    E  P  ++++ P +H+GVVGI+ASR
Sbjct: 317 ELASTLDSINRERREIEGGMREQAMLMAESLFDESEEPPPAISVFDPDFHEGVVGIVASR 376

Query: 377 IKERFHRPVIAF----APTGDGTLKGSGRSIQGLHMRDALERLDTLYPGLIMKFGGHAMA 432
           IK++ HRP   F    AP  +  LKGSGRSI G H+RDAL+ +   +PG+I+KFGGHAMA
Sbjct: 377 IKDKLHRPTFVFAASSAPGKEHELKGSGRSIPGFHLRDALDLVAKRHPGVILKFGGHAMA 436

Query: 433 AGLSLEEARFEEFQQRFGELVTEWLDPALLQGEVVSDGPLTAAEMSMEVAQMLRDAGPWG 492
           AG ++ E  F+ F+Q F ++  EWLD A L   + +DGPL       ++   L     WG
Sbjct: 437 AGCTVAEEAFDVFEQAFAQVAQEWLDAATLTRRIETDGPLAPEYCRADIVDTLH-REVWG 495

Query: 493 QMFPEPLFDGRFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTSLWPDNGVREVQL 552
           Q F  P F    +++ QRLVGE    + ++ +  G  +D I F     L        V L
Sbjct: 496 QGFAPPTFSEEVQIVSQRLVGEAKNHLSLKLIHQGNPVDAIWFGHTEQL-----PARVLL 550

Query: 553 AYKLDINEFRGNRSLQLIID 572
           A++LD+NE++G R +Q +++
Sbjct: 551 AFRLDVNEWKGERKVQFLVE 570