Pairwise Alignments

Query, 577 a.a., ssDNA exonuclease RecJ from Klebsiella michiganensis M5al

Subject, 565 a.a., single-stranded-DNA-specific exonuclease RecJ from Ralstonia solanacearum GMI1000

 Score =  484 bits (1247), Expect = e-141
 Identities = 270/551 (49%), Positives = 352/551 (63%), Gaps = 12/551 (2%)

Query: 24  PLLQRLYASRGVRSAQELERGVKGMLPWSQLTGVEKAVEILYGAFKQGLHIVVVGDFDAD 83
           P+L R+ A+RGV    EL   +  +LP +QL G++ A   L  A   G  +++V D+D D
Sbjct: 24  PILARILAARGVARPSELSTELTDLLPPAQLKGIDDAARYLADAIAAGKRLLIVADYDCD 83

Query: 84  GATSTALSVLALRALGYGNVSYLVPNRFEDGYGLSPEVVDQAHARGAQLIMTVDNGISSH 143
           GAT+ A+ V  LR LG   V Y+VPNRFE GYGLSPE+V  A      +++TVDNGI+  
Sbjct: 84  GATACAVGVRGLRMLG-AQVGYIVPNRFEYGYGLSPEIVALAARERPDVLVTVDNGIADV 142

Query: 144 AGVDHAHALGIPVLVTDHHLPGDSLPAAEAIINPNLRDCEFPSKSLAGVGVAFYLMLALR 203
           AGV  A+ALGI V+VTDHH+PG  LP A  I+NPN   C FPSK LAGVGV FY++LALR
Sbjct: 143 AGVAAANALGIDVVVTDHHMPGAQLPEARVIVNPNQPGCGFPSKHLAGVGVMFYVLLALR 202

Query: 204 TFLRDKGWFEERGIAPPNLADLLDLVALGTVADVVPLDANNRILTWQGLSRIRAGKCRPG 263
             LR++G F  +    P L  LLDLVALGTVADVV LDANNR+L  QGL R+RAG+   G
Sbjct: 203 AELRNRGAFTPQN--QPRLDALLDLVALGTVADVVRLDANNRLLVAQGLKRMRAGRMCAG 260

Query: 264 IKALLEIANRDPQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNTGEARVLANELD 323
           I AL  +A R+ ++ +  DLGF LGPRLNAAGRL DMS+G+  LL D+   A  +A ELD
Sbjct: 261 IAALFRVAGREARRASTFDLGFGLGPRLNAAGRLADMSLGIECLLTDDFDRAMAIAAELD 320

Query: 324 ALNQTRKEIEQGMQAEALT-LCEKLERSGETLPGGLAMYHPQWHQGVVGILASRIKERFH 382
            +N+ R+EIE GMQ EA+  L   L          +A+Y+  WHQGV+GI+ASR+K++FH
Sbjct: 321 GMNRERREIEAGMQQEAMAILASTLAGMDGAGRHTIAVYNETWHQGVIGIVASRLKDKFH 380

Query: 383 RPVIAFAPTGDGTLKGSGRSIQGLHMRDALERLDTLYPGLIMKFGGHAMAAGLSLEEARF 442
           RPVI FAP  DG +KGSGRSI G H+RDAL+ +    PGLI+KFGGHAMAAGLSL    F
Sbjct: 381 RPVITFAPGDDGVIKGSGRSIPGFHLRDALDAVHKRCPGLIVKFGGHAMAAGLSLHADGF 440

Query: 443 EEFQQRFGELVTEWLDPALLQGEVVSDGPLTAAEMSMEVAQMLRDAGPWGQMFPEPLFDG 502
           + F + F  +  EWLD +LL   + +DG   A   + +  ++L +   WGQ FP P F G
Sbjct: 441 DRFVETFEAVGREWLDESLLSRVLETDGEAEAECFTPQFVELL-ETHVWGQGFPAPSFCG 499

Query: 503 RFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTSLWPDNGVREVQLAYKLDINEFR 562
            F +L Q ++ ++HLK+ +    G    D I FN    L          +AY+LD N F 
Sbjct: 500 EFDVLSQAVLKDKHLKLQLG--RGKQRFDAIWFNHAEPLG-----ASAYVAYRLDNNTFN 552

Query: 563 GNRSLQLIIDH 573
           G   +Q++I+H
Sbjct: 553 GITRVQMVIEH 563