Pairwise Alignments

Query, 417 a.a., N-acetylmuramoyl-L-alanine amidase from Klebsiella michiganensis M5al

Subject, 463 a.a., N-acetylmuramoyl-L-alanine amidase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  226 bits (576), Expect = 1e-63
 Identities = 142/403 (35%), Positives = 221/403 (54%), Gaps = 26/403 (6%)

Query: 11  RRFLQGAGAMWLMSVSPVGLAAAAQVVAVRVWPSSTYTRVTVESNHILKYRQFALSNPER 70
           + + QG   + L +   V   AA Q+ +VR+W +   TR+  + + +  Y  F L  P R
Sbjct: 5   KHYFQGI-ILLLCTFFAVAAQAANQLESVRIWAAPESTRIVFDLSEVPNYSYFTLDGPNR 63

Query: 71  LVVDLEGVNLNSVLKGMGGQIRGDDPYIQSARVGQFDPQ-TVRMVFELKQNVKPQLFALA 129
           LVVDL+  +    LK     +  +   ++  RV +   +  +R+V +L + + P LF+L 
Sbjct: 64  LVVDLKKASTKLNLKN----VDNNSKLVKGIRVSKSPTKGDLRLVIDLVKPLNPNLFSLP 119

Query: 130 PVAGFKERLVMDLYPANATDVQDPLLALLEDYNKGDLQRQVPPAESGPKPGKAGRDRPIV 189
             A +  RLV+DL   +AT       A L   +   +++ V  +       +A RD  IV
Sbjct: 120 VTAPYGNRLVVDLEDKSAT-------AELSAVSSTPVKKNVTQSV------QASRD--IV 164

Query: 190 IMLDPGHGGEDSGAVGKYRTREKDVVLQIARRLRALIEKEGNMKVYMTRNEDVFIPLKVR 249
           I +D GHGG+D G++G     EK VV +I++RL + I     M+  M R+ D F+ L  R
Sbjct: 165 IAIDAGHGGDDPGSIGPSGLYEKKVVFEISKRLASKINDTPGMRAVMIRSGDYFVNLNRR 224

Query: 250 VAKAQKQRADLFVSIHADAFTSRQPSGSSVFALSTKGATSTAAKYLAQTQNASDLIGGVS 309
              A+  +ADL +SIHADAFTS  P G+SV+ LS + A S   ++L Q +  S+L+GG  
Sbjct: 225 SELARNSKADLLISIHADAFTSPNPRGASVWVLSMRRANSEIGRWLEQKEKHSELLGGAG 284

Query: 310 K-----SGDRYVDHTMFDMVQSLTIADSLKFGKAVLEKMGNINNLHKNRVEQAGFAVLKA 364
           +       ++Y+  T+ DM  + ++A        +L+ +G +  LHK+R E A FAVLK+
Sbjct: 285 EIIQNTDNEQYLAMTLLDMSMNSSMAIGHSVAGDILKDLGAVTELHKSRPESASFAVLKS 344

Query: 365 PDIPSILVETAFISNVEEERKLKTAKFQQEVAESILAGIKAYF 407
           PDIPSILVET FISN +EER L +++ Q+ +A +I  G+  YF
Sbjct: 345 PDIPSILVETGFISNPKEERLLSSSRHQESIATAIYKGVNRYF 387