Pairwise Alignments

Query, 264 a.a., tRNA pseudouridine synthase TruC from Klebsiella michiganensis M5al

Subject, 329 a.a., RluA family pseudouridine synthase (RefSeq) from Shewanella loihica PV-4

 Score =  119 bits (299), Expect = 6e-32
 Identities = 74/222 (33%), Positives = 121/222 (54%), Gaps = 14/222 (6%)

Query: 4   ILYQDQWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63
           IL++D+ ++ +NKP+G  VH         +  M+++R Q  + +   HRLD+ TSGVLL+
Sbjct: 108 ILFEDKAIIVLNKPAGIAVHGGSGVDFGVIEAMRSLRPQ-QKFLELVHRLDKETSGVLLI 166

Query: 64  GLSSEAGRLLSQQFEQHQMQKRYHAIARG-WLNDEAVLDYPLVEELDKIADKFARENKDP 122
                A + L  Q    +MQK Y A+ RG W N + V++ PL++   K  ++  R N++ 
Sbjct: 167 AKKRRALKHLHDQLRYKKMQKDYMALVRGEWQNHDKVINAPLLKLTLKSGERIVRVNQEG 226

Query: 123 QPAVTHYRGLATVEMAVATGRYPTTRYSLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHG 182
           +P+ T ++ +   + A           +LV+  P TGR HQ+R H  +  HPI  D K+ 
Sbjct: 227 KPSETRFKIMQRYQGA-----------TLVQASPVTGRTHQIRVHCQYAGHPIACDEKYS 275

Query: 183 DLRQNRSAAEHFGCDRLMLHASQLSLTHPFTGEPLVIRAGLD 224
           + + +  A    G +RL LHA+QL  THP + E + ++A LD
Sbjct: 276 EQKFD-DAMRELGLNRLFLHAAQLKFTHPVSEEVMQVKAPLD 316