Pairwise Alignments

Query, 264 a.a., tRNA pseudouridine synthase TruC from Klebsiella michiganensis M5al

Subject, 225 a.a., pseudouridylate synthase (RefSeq) from Shewanella loihica PV-4

 Score =  111 bits (277), Expect = 2e-29
 Identities = 79/220 (35%), Positives = 114/220 (51%), Gaps = 27/220 (12%)

Query: 2   LEILYQDQWLVAVNKPSGWLVHRSWLDRDEKV---VVMQTVRDQIGQHVFTAHRLDRPTS 58
           LEIL++D+ ++ VNKPSG L   S   RD      V  + +RD     +   HRLD  TS
Sbjct: 14  LEILHEDKDILVVNKPSGLL---SVPGRDPAYYDSVYTRVLRDHPNAQI--VHRLDMATS 68

Query: 59  GVLLMGLSSEAGRLLSQQFEQHQMQKRYHAIARGWLN-DEAVLDYPLVEELDKIADKFAR 117
           G++++ L   A R L +QF   +  K Y+A   G L  ++  +DYPL+ +          
Sbjct: 69  GIIVVALRRSAERELKRQFRDRETHKIYYARVAGHLKAEQGSVDYPLICDWPN------- 121

Query: 118 ENKDPQPAVTHYRGLATVEMAVATGRYPTTRYSLVELEPKTGRKHQLRRHLAHLRHPIIG 177
               P+  V H  G A+  +     R    R +LV+L P TGR HQLR H+  + HPI+G
Sbjct: 122 ---RPKQKVDHQIGKASKTLFEVISR--AKRSTLVKLTPITGRSHQLRVHMMAIGHPILG 176

Query: 178 DSKHGDLRQNRSAAEHFGCDRLMLHASQLSLTHPFTGEPL 217
           D+ + D    R A       RL+LHA  LSLTHP++ +P+
Sbjct: 177 DNFYADPLAKRLA------PRLLLHAQSLSLTHPYSKQPM 210