Pairwise Alignments

Query, 594 a.a., ATPase AAA from Klebsiella michiganensis M5al

Subject, 640 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas fluorescens FW300-N2E2

 Score =  292 bits (748), Expect = 3e-83
 Identities = 227/616 (36%), Positives = 316/616 (51%), Gaps = 47/616 (7%)

Query: 12  IEASPLLSDSWCRSQ-RYGLDPATDD-FPRLHASELAERLASHSRLQTLAQPVVNALSRK 69
           I    +++ SW RS  ++ LDP++      L A ++ +    H +   +A   V+ L+R+
Sbjct: 26  IRPDRVIAQSWYRSVIKHRLDPSSSARLDVLCAEDIRQHQQRHQQYLDIASQGVSGLARR 85

Query: 70  VNDLQSVVVLSDASGLVLQTFGDTHAMQKAQRFALAPGNLWSESGRGTNAIGTALAIDDS 129
           V      V+LSD  G+ L        +    R  L  G  W ES  GTN IGT LA  + 
Sbjct: 86  VVPAGFAVLLSDEHGITLDARLPDQPVPYV-RSGLVVGARWDESIAGTNGIGTTLAAAEP 144

Query: 130 CEIDGRQHFLTSNRGLYCAAVPLQSPDGNIAGVLDIS-----GPAHYPHARTLSWVKGAA 184
             I   +HFLTSN  L C+  P+ +  G + G L+ +     GP    +  TL  V   A
Sbjct: 145 LIIHREEHFLTSNARLSCSVAPIFNAQGLLQGCLNATCLNSNGPKESQYL-TLQLVILYA 203

Query: 185 KQIEYLWFKQSLHPQQWLMSLHPQPEKLDGVDELLLVFTDAV-LTAANRLAMREFSLNAE 243
           + IE   F+Q+ +  +  +SL P  E  D  +E LL   D+  +  AN  A   F  + +
Sbjct: 204 RLIENAHFRQN-YRDRLTLSLKPIDEIADLANEQLLALDDSGRVIGANHAA---FVAHDQ 259

Query: 244 QFG-HLT---FQQLFP-----------------RLRQTAVSIPLPLAAGDRHYYYRLRAP 282
             G HL     +QL P                 RLR       L L+       +RL AP
Sbjct: 260 AHGPHLLGGPIEQLLPMGVNELLRLTNGGARGLRLRARHDEALLDLSLRIPSSDHRL-AP 318

Query: 283 ATASVAVTPRPGIDLLFSS----QREGEKLLRLLNAGIGLCIEGETGCGKEYVSRTLHRH 338
           A A       P ++ L       Q+   +L ++++  I + I GETG GKE  +R +H+ 
Sbjct: 319 APAKAQRPRHPDLEQLAGDDPTLQQAVRRLHKVIDKDIAILITGETGTGKEAFARAIHQA 378

Query: 339 SRWSGGKFVAINCAAIPESLIESELFGYQPGAFTGANKNGYIGKIREADGGVLFLDEIGD 398
           S      F+A+NCAAIPESLIESELFGY+ G+FTGA+K G  GK+  A+GG LFLDEIGD
Sbjct: 379 SARRDEPFIALNCAAIPESLIESELFGYRGGSFTGADKKGMKGKLELANGGTLFLDEIGD 438

Query: 399 MPLTLQTRLLRILQEKEVTPLGASRSSPVNFAVICATHRNLAQRVAEGTFREDLLYRLRE 458
           MP  LQTRLLR+L E+E++P+GA     ++  VICATH++L   + +  FREDL YRL  
Sbjct: 439 MPAHLQTRLLRVLAEREISPIGAPMPVSLDIQVICATHQDLQGMLRDKHFREDLFYRLNG 498

Query: 459 FALTLPPLREWPELPAFIQRLWRDLGGEKRRVALGPALVQHLATQPWPGNVRQLQSLMRV 518
             L+LPPLRE  +    IQRL  D   E + V L     Q L    WPGN+RQL + +R 
Sbjct: 499 MNLSLPPLRERSDRAQLIQRL-LDSQAEAKGVQLTAQARQCLLEASWPGNIRQLINALRY 557

Query: 519 LLALAEEGETLAVGDLPQEYRSSPA----PRPPRGLQQHDAQLIADTLASYNGNISKAAQ 574
            +A+AE+G  + V  LP E     A      P  G +   + L+ + L  +  NIS AA 
Sbjct: 558 AVAMAEDG-NVDVDCLPAELLQGDAYARLASPSVGSEPPASNLL-EILRRHRWNISAAAA 615

Query: 575 ALGVARSTLYRRAARR 590
            LGVARSTLYR+  ++
Sbjct: 616 ELGVARSTLYRQMKKQ 631