Pairwise Alignments

Query, 662 a.a., bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC from Klebsiella michiganensis M5al

Subject, 643 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  339 bits (869), Expect = 3e-97
 Identities = 228/663 (34%), Positives = 331/663 (49%), Gaps = 82/663 (12%)

Query: 61  VVAESGFGTG---LNFLTLWQAFDVFHRENPQATLQRLHFISFEKFPLKADDLRLAHQR- 116
           ++ + G G G   L+F+  WQ             L RL    FE  P+   +L+L   + 
Sbjct: 1   MMGQWGLGDGIELLSFIHYWQTLA------KTQNLPRLLLKVFEPNPINYYELKLLWDQS 54

Query: 117 -----WPELASWAEQLQAQWPLPIAGCHRLLLDEGRVTLDLWFGDINELTNELDDSLNRQ 171
                 P L   A  +    P  I GC RL+ D+GR++LDL FGD+  +           
Sbjct: 55  QSLILHPHLQPIANAIIEAKPARIIGCQRLIFDDGRISLDLDFGDLQTMLVNQPHCGTYP 114

Query: 172 VDAWFLDGFAPAKNPDMWTAELFAAMARLARPGGTLATFTSAGFVRRGLQEAGFSMHKRK 231
           +  W +    P   P + + ++   MARL+           A F+   L E   ++ K  
Sbjct: 115 IQQWLI---LPHLAPQL-SRKILWQMARLSAD--------DAHFIGVELAETTQNLAKTC 162

Query: 232 GFGR---KREMLTGEMLQTLEIP----------------------ARAPWFARSGTEQRD 266
           GF       +ML GE + ++                         A  P  ++  + ++ 
Sbjct: 163 GFSPLTITADMLCGEQIDSIASQIVTDDILLHERKLLRQQANNHQAFTPRPSQVASTKQP 222

Query: 267 AAIIGGGIASALLALALLRRGWQVTLYCADSAPADGASGNRQGALYPLLSQHDPALARFF 326
            AIIGGG+ASA L L+L  R     L+C D+    GASGNRQGA+YPLL+  +  L+RFF
Sbjct: 223 IAIIGGGLASAHLMLSLAEREQSSILFCKDNDLGQGASGNRQGAIYPLLTPENDELSRFF 282

Query: 327 PAAFTFARRLYDTLPVM-------------FDHEWCGVTQLGWDVKSAQKIAQMIEL-NL 372
             AF F+RR    L +                H++CGV Q G D +S Q++ ++I+  + 
Sbjct: 283 QQAFLFSRRRIAALSLASMKGSDVASGVMPISHDFCGVLQTGHDERSQQRLDKIIQSQDW 342

Query: 373 PPEIAVAVDAEAAEQQTGVETGCGGIAYPAGGWLCPQQLTAELLALAAT-RGLRVHYDYP 431
           P EIA AVDA  A +   +     G  YP GGW+CP +     +  A+    ++ H++  
Sbjct: 343 PAEIAYAVDASEANKIAKIGIDKAGFYYPLGGWVCPFEYAKAAVDKASQLANVQCHFNTE 402

Query: 432 VEALSADNSGWQLNQRQYH----EVVILANGHRLTHFIQTEHLPMYPVAGQVSHIPTTPG 487
           +  +  D  GW L  +         ++LANG +LT F  +E L + P  GQVSHIP+   
Sbjct: 403 ITEIERDAKGWYLLSQDQRFGPFRQLVLANGAQLTQFSASERLQISPFRGQVSHIPSQFQ 462

Query: 488 LSKLRQVLCYNGYLTPQNPHNQQHCIGASYHRGQADAAFSADDQQQNRQRLIDCFPQAEW 547
           LS+L  VLC NGYLTP   H   HC+GASY +      F   +Q +N  ++   +P  +W
Sbjct: 463 LSQLATVLCANGYLTPS--HQGLHCLGASYVKAAEHLDFCPLEQLENLGKMQQSYPNQDW 520

Query: 548 TREVDVSANQSRSGVRCATRDHLPMVGNVPDYDATLSAYASLAERQEQAGE--------- 598
             ++D+SAN +R GVR  TRDH PM+G  PD +   + Y      Q+QA +         
Sbjct: 521 VEDIDISANSARVGVRMVTRDHFPMMGCAPDVNEIWARYEQHQINQQQAEQIRHYWQTTP 580

Query: 599 APVYRNLYMLGALGSRGLCSAPLAAEILASQMSNEPLPMDKETLAALNPNRLWVRKLLKG 658
           AP++  LY+LG LGSRGL S PLAAE LA+Q+++EPLP+D  TL  L+PNR+W+RKLLKG
Sbjct: 581 APIHDGLYILGGLGSRGLSSGPLAAECLAAQLTDEPLPLDWPTLNKLSPNRMWLRKLLKG 640

Query: 659 KAV 661
           KA+
Sbjct: 641 KAL 643