Pairwise Alignments

Query, 192 a.a., electron transport complex subunit RsxB from Klebsiella michiganensis M5al

Subject, 293 a.a., Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfB (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  103 bits (258), Expect = 2e-27
 Identities = 64/192 (33%), Positives = 93/192 (48%), Gaps = 26/192 (13%)

Query: 1   MNAVWIAVVAISLLGLIFGLILGYASRRFAVEDDPVVEKIDALLPQSQCGQCGYPGCRPY 60
           MN + IAV+++  + L+   IL  AS++FAV +DP + ++  +LPQ+ CG CGYPGC  +
Sbjct: 1   MNLILIAVISLGAIALVLAAILYVASKKFAVYEDPRIAQVGEVLPQANCGGCGYPGCSGF 60

Query: 61  AEAVGTQGE-KINCCAPGGEAVMLKIAELLNV---DPQPT-------------------D 97
           A+A    G      C  GG+ VM +IA++L +   + +P                    D
Sbjct: 61  ADACVKAGSLDGKFCPVGGQPVMAQIADILGLAATEAEPMVAVVRCNGSCANRPRINQYD 120

Query: 98  GDAQEAEPARMLA--TIDEANCIGCTKCIQACPVDAI-IGATRAMHTVMSDLCTGCNLCV 154
           G    A  A +    T     C+GC  C+ AC  DAI +     +  V    CT C  CV
Sbjct: 121 GAKSCAIAASLYGGETGCSYGCLGCGDCVAACQFDAIHMNPETGLPEVDEAKCTACGACV 180

Query: 155 APCPTQCIELRP 166
             CP   IE+RP
Sbjct: 181 KACPKAIIEIRP 192



 Score = 40.8 bits (94), Expect = 2e-08
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 106 ARMLATIDEANCIGCTKCIQACPVDAIIGATRAMHTVMSDLCTGCNLCVAPCPTQCI 162
           AR   T+   +CIGC KC++ CP +AI       + +  + C  C  CV  CP   I
Sbjct: 213 ARKACTV---SCIGCGKCVKTCPFEAITLENNLAY-IDPNKCKSCRKCVEVCPQNTI 265



 Score = 31.2 bits (69), Expect = 2e-05
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 109 LATIDEANCIGCTKCIQACPVDAII 133
           LA ID   C  C KC++ CP + II
Sbjct: 242 LAYIDPNKCKSCRKCVEVCPQNTII 266