Pairwise Alignments

Query, 321 a.a., antimicrobial peptide ABC transporter permease SapB from Klebsiella michiganensis M5al

Subject, 343 a.a., binding-protein-dependent transport systems inner membrane component (RefSeq) from Shewanella loihica PV-4

 Score =  236 bits (601), Expect = 8e-67
 Identities = 126/341 (36%), Positives = 198/341 (58%), Gaps = 22/341 (6%)

Query: 1   MIIFTLRRLLLLLIT---LFLLTFV---GFSLSYFTPHAPLQG----------------A 38
           M  + +RRL L L T   LFL+ F+    F + +      LQ                 +
Sbjct: 1   MARYLIRRLNLFLATSLVLFLVMFIVTSKFPVEHTFALTGLQSPTAQELTQIAQDYQLDS 60

Query: 39  SLWNAWLFWFEGVLHWDFGVSSINGQLISEQLKEVFPATMELCILAFGFALVIGIPVGML 98
           S  + +L + +  L  + G+S+ +   + ++L  V PA+ EL I+A   ALV+G+P+G+L
Sbjct: 61  SQAHQFLAYLQQRLSGNLGISATSQNPVIDELTAVLPASFELGIVAGLIALVLGLPLGVL 120

Query: 99  AGIMRNKWPDTLISALALLGFSIPVFWLALLLTLFFSLTLGWFPVSGRFDLLYEVKSVTG 158
           A + ++K     I A+ L G+SIPVFWL L L+L+F + LGW P+SG+ +LLY+++ VTG
Sbjct: 121 ASLSKHKITQHTIMAITLTGYSIPVFWLGLSLSLWFGVQLGWLPISGQINLLYDIRPVTG 180

Query: 159 FALIDAWLSDSPWRHEMIVSAARHMVLPVLTLAVAPTTEVIRLMRISTSEVYDTNYVKAA 218
           F LID  LSDS +     + A  H++LP +TLAV P T V+R+ R +   + +  Y+KAA
Sbjct: 181 FLLIDTLLSDSQYATSAFIDALLHIILPAVTLAVLPFTVVVRITRAAMIAIMEQTYIKAA 240

Query: 219 ATRGVSRRTILHRHVLHNALPPVIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLINAIRQ 278
             RG+    I+ RH L NA  PV+  LGL      + AM+ E++FSWPG+G WL++ I Q
Sbjct: 241 EARGLHTSIIVLRHALPNAFIPVLKNLGLMLGAFASYAMVVEVIFSWPGVGAWLVSGIYQ 300

Query: 279 QDYAAISAGVMVIGALVIIVNVISDILGAMANPLKHKEWYA 319
           +DY  I  G++ +  ++I ++++ +++    NPL  KE YA
Sbjct: 301 RDYTVIQGGILAVALIIIFLSILIEVIHTAMNPLSRKELYA 341