Pairwise Alignments

Query, 409 a.a., integrase from Klebsiella michiganensis M5al

Subject, 515 a.a., hypothetical protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  132 bits (333), Expect = 2e-35
 Identities = 110/397 (27%), Positives = 187/397 (47%), Gaps = 40/397 (10%)

Query: 21  LRKALSKKRDKIEVISDAHGLNVRLSTSGSITFFYRYRWNGKAVQLTIGDYPT----ISL 76
           ++ A S+   K+ V   A  L ++   SG  +F YR    GK +++ +G +      +S 
Sbjct: 7   IKTAASRSEQKVRV---ADNLYIKPLKSGVGSFIYRGTVAGKRIEIVLGQFGNGPGKMSK 63

Query: 77  SQARERRQQLRAWLTEGLDPRRQTVLEKQKKTEALTVKEAF-----DYWEKFYCIPEGLV 131
           S A+ +  +L+  + EG +P+    LE +K   AL  ++ F     DY+E  YC    + 
Sbjct: 64  SDAKNQVAELQRQVKEGKNPK----LEIKKLAAAL--QDTFGSVTQDYFEG-YC--RTID 114

Query: 132 KIKVNRRDFNNHIAPVLGDMIVDQTTKA---HWLNLFDGMGRRVVTGQMLGLMQRTFRFC 188
                R  + N++A  LG++ V   T+      +N  D   +R     +L L+ +     
Sbjct: 115 HPGRPRALYTNYVAKTLGELPVSYITRIMVRDLVNSIDAGVKRTANINVLRLIDKILDHA 174

Query: 189 SNRGVINFNPIESLRRSDVGLTAAVKDRWLSDEEIKAVWNVLPEMKHRQQ-LIMKFLIMT 247
              G++  N  + + R  +G  A  ++R LS EEI  V  +L +   R   L    L++ 
Sbjct: 175 VELGMLETNVAKGINRKKIGAKAEPRERNLSFEEIPIVLAILRDHVSRDNYLAFILLLIL 234

Query: 248 GCRSTEIRTAKWEWFDFQEEAWTIPASDYKTGKSVRRALPEAVVRMMKAEKETSLSNHVV 307
           G R  E+  AKW  FD +++ W +P    KT KS+  A+PE ++ ++   KE S S+  +
Sbjct: 235 GVRKNELLQAKWTEFDLEKQIWLLPNGRSKTKKSIAIAIPEPLMPILLEVKERSGSSDYL 294

Query: 308 TLSRYKG---PEDDRPPLQPNVASFSAQ------------IVARTGMKTWSLHDLRRTIA 352
             +R  G   P   +  L   ++    +            I    G+  +++HDLRRT +
Sbjct: 295 FPARRNGSNVPHTGKDTLNTALSKLFGKENKGKKSRPLPNIFEAAGIPHFTVHDLRRTCS 354

Query: 353 TRLSELGAPPHVIEKLLGHHMSGVMARYNLHDYLDDQ 389
           +RLSEL  P  +IEK+L H  +GV   YN +D L ++
Sbjct: 355 SRLSELSVPDEIIEKILNHTKAGVRGTYNRYDCLKER 391