Pairwise Alignments

Query, 409 a.a., integrase from Klebsiella michiganensis M5al

Subject, 388 a.a., integrase family protein (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 97.1 bits (240), Expect = 8e-25
 Identities = 87/347 (25%), Positives = 154/347 (44%), Gaps = 21/347 (6%)

Query: 40  GLNVRLSTSGSITFFYRYRWNGKAVQLTIGDY-PTISLSQARERRQQLRAWLTEGLDPRR 98
           GL V+ S S S    YR R  G++ + TIG + P ++L QARE  +   A    G DP  
Sbjct: 32  GLRVKSSGSKSYVVQYRNRQTGRSRRKTIGQHGPLMTLYQAREIARGYLADALRGGDP-- 89

Query: 99  QTVLEKQKKTEALTVKEAFDYWEKFYCIPEGLVK-IKVNRRDFNNHIAPVLGDMIVDQTT 157
             V+E Q + +A ++++  D +   + +P+   +   ++R   +  + P  G   VD+ +
Sbjct: 90  --VMEAQARRKAKSMRDLADDYMTNHALPKKRPRSAAMDRSLLDRVVLPAFGRQSVDEVS 147

Query: 158 KAHWLNLFDGM-GRRVVTGQMLGLMQRTFRFCSNRGVINFNPIESLRRSDVGLTAAVKDR 216
                 L + +        ++L L+ + F      G+   NP++ + R         + R
Sbjct: 148 HKDIQRLHNSLRDTPYQANRVLALLSKMFELAIRWGLRGDNPVKGVPR----FAEEKRYR 203

Query: 217 WLSDEEIKAVWNVLP-EMKHRQQLIMKFLIMTGCRSTEIRTAKWEWFDFQEEAWTIPASD 275
           WLSD E+  +   L      R    ++  ++TG R+ E+ T++W  FD     W  P+  
Sbjct: 204 WLSDNELDRLREALDAHPNQRAANAIRLQLLTGARTGEVLTSQWSDFDLDRGVWVKPSHH 263

Query: 276 YKTGKSVRRALPEAVVRMMKAEKETSLSNHVVTLSRYKGPEDDRPPLQP--NVASFSAQI 333
            K  ++    L  A V +++     S+++     S +  P   R P  P  ++  F   +
Sbjct: 264 TKQKRTEHLPLSAATVALLR-----SIAHGRTDDSPFVFP--GRKPGHPIKDLKRFWTSV 316

Query: 334 VARTGMKTWSLHDLRRTIATRLSELGAPPHVIEKLLGHHMSGVMARY 380
            +  G+K + LHD R T A+ L   G    ++ +LLGH       RY
Sbjct: 317 TSTAGLKDYRLHDNRHTHASHLVSSGHSLPIVGRLLGHTNPMTTQRY 363