Pairwise Alignments

Query, 644 a.a., exoribonuclease II from Klebsiella michiganensis M5al

Subject, 808 a.a., ribonuclease R (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  198 bits (504), Expect = 7e-55
 Identities = 174/646 (26%), Positives = 283/646 (43%), Gaps = 39/646 (6%)

Query: 22  VEGVVKGTEKGFGFLEVDSQ-KSYFIPPPQMKKVMHGDRIIA--VVNTEKERESAEPEEL 78
           + G V G ++G+GF + D      FI    M    HGD+++A  V    K R  A    L
Sbjct: 85  ISGTVLGHKEGYGFFKPDEGGDDLFISNRDMLMYFHGDKVLAQKVGMDRKGRREARIVRL 144

Query: 79  VEPFLTRFVGKVHKKDDRLSIVPDHPLLKDAIPCRAARGVEHDFKEGDWGVAEMRRHP-- 136
           ++P     VG+ H       ++ D   +   I    A    +  ++GD  V E+ R P  
Sbjct: 145 IQPRSAAIVGRFHVDSGMAFVIADDKRITQEI--LIASEDRNGARQGDVVVVELTRRPGR 202

Query: 137 -LKGDRGFYAELTQYITYGDD-------HFVPWWVTLARHNLEKEAPDGVATEMLDEGLE 188
            +K        L + +  G +       + +P   + A     +  PD V      + + 
Sbjct: 203 FVKAAGKVTEVLGKQMAPGMEIEIALRNYDLPHTWSAAIEKKLRRIPDEVTES---DKVG 259

Query: 189 RRDLTELAFVTIDSASTEDMDDALYVEQNADGKLHLTVAIADPTAWIAEGSKLDNTAKIR 248
           R DL  L  VTID     D DDA+Y E    G   L VAIAD + ++   S LD  A+ R
Sbjct: 260 RVDLRSLPLVTIDGEDARDFDDAVYAEVKPSGGWRLWVAIADVSYYVRTDSALDTEARAR 319

Query: 249 AFTNYLPGFNIPMLPRELSDDLCSLRPNAVRPVLACRMILADDGAIEDDIQFFAATIESK 308
             + Y P   IPMLP ++S+ LCSL P+  R  +   M ++  G +    +F+ A + S 
Sbjct: 320 GNSVYFPSQVIPMLPEKISNGLCSLNPHVDRLCMVAEMTISARGKL-SGYKFYPAVMHSH 378

Query: 309 AKLAYDDVSDWLENNGSWQPDSETVARQIKLLQEVCLRRSEWRKNHALVFKDRPDYRFVL 368
           A+  Y  V+  LE  G   P+ E +   ++ LQ + L   E R     +  +  + +F+ 
Sbjct: 379 ARFTYTQVAAMLE-GGPIAPEHEALFVHLQCLQSLYLALDEQRAERGAIAFETIETQFIF 437

Query: 369 GEKGEVLDIVAEPRRIANRIVEESMIAANICAARVLRDKLGFGVYNVHTGFDPANTEQLA 428
            ++ ++  IV   R  A++I+EE MI AN+ AA+ ++   G  +Y VH            
Sbjct: 438 NDQRKIDKIVPRARNQAHKIIEECMILANVSAAKFVKKHKGEILYRVHESPSEQKLANFK 497

Query: 429 ALLKTHDVHVDPVEVLTLEGFCKLRRELDAQPSG-FLDSRIRRFQSFAEISTEPGPHFGL 487
             L    + +      T   +  +  ++  +P    +   + R    A  + +   HFGL
Sbjct: 498 EFLAERGLSMGGGLEPTPADYQNVMLQIADRPDAELIQVMLLRSMRQAIYTPDNEGHFGL 557

Query: 488 GLEAYATWTSPIRKYGDMINHRLLKAII---KGEAISR--PQDDVAIQMAERRRLNR--- 539
            LE YA +TSPIR+Y D++ HR+++ ++   KGEA  +  P      Q+ E  +L     
Sbjct: 558 ALEEYAHFTSPIRRYPDLVLHRVIRYLLAKEKGEANEKWTPDGGYHYQLDELDQLGEECS 617

Query: 540 -------MAERDVGDWLYARYLNPQAGTTTRFAAEIIDVSRGGMRVRLVDNGAVAFIPAP 592
                   A RDV DWL   ++    G T  F A I  V+  G+ VRL D      +   
Sbjct: 618 TTERRADEATRDVSDWLKCEFMQDHVGDT--FEAVIASVTNFGLFVRLNDLFIDGLVHIS 675

Query: 593 FLHAVRDELVCSQENGTVQIKGEVVYKVTDVIDVTIAEVRMETRSV 638
            L +   +    ++    +  G+ VY+V D + V +A V ++ R +
Sbjct: 676 SLGSDYYQFDPMRQRLIGEHTGQ-VYQVGDPVTVKVAAVNLDDRQI 720