Pairwise Alignments

Query, 651 a.a., DNA topoisomerase III from Klebsiella michiganensis M5al

Subject, 702 a.a., DNA topoisomerase III (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  706 bits (1823), Expect = 0.0
 Identities = 367/667 (55%), Positives = 467/667 (70%), Gaps = 21/667 (3%)

Query: 1   MRLFIAEKPSLGRAIAEVLPKPHRKGDGYIECGNGQVVTWCIGHLLEQAQPDVYDARYAR 60
           M L+IAEKPSLGRAIA+VLPKPH+KG+G+IE  NG  V+WC+GHLLEQA+PD Y+  +  
Sbjct: 1   MILYIAEKPSLGRAIADVLPKPHKKGEGFIEDANGNCVSWCVGHLLEQAEPDAYNPDFKS 60

Query: 61  WNLLDLPIVPEKWQLQPKPSVTKQLNVIKRLLGDAQEVIHAGDPDREGQLLVDEVLDYLQ 120
           W    LPIVPEKWQL+PK +   QL V+K+L+  A  +++AGDPDREGQLLVDEV+ YL 
Sbjct: 61  WKFEHLPIVPEKWQLKPKAATRSQLTVLKKLIKQADTLVNAGDPDREGQLLVDEVIAYLG 120

Query: 121 LAPEKRQQVQRCLINDLNPQAVERAINRLRANSEFVPLCVSALARARADWLYGINMTRAY 180
           +  +K QQ QR LI+DLNPQAV+RA+++LR+N EF+PL  SALAR+RADWLYG+NMTRAY
Sbjct: 121 VTGDKLQQTQRLLISDLNPQAVKRALSQLRSNREFIPLSTSALARSRADWLYGMNMTRAY 180

Query: 181 TILGRNAGYQGVLSVGRVQTPVLGLVVRRDEEIENFVAKDFFDVKAHIVTPKDERFVATW 240
           TI G+  GYQGVLSVGRVQTP+LGL+VRRDEEI +F +K F++V AH+VT K + F A W
Sbjct: 181 TIQGKKVGYQGVLSVGRVQTPLLGLIVRRDEEIAHFQSKPFYEVLAHLVTDKQQFFSAKW 240

Query: 241 VPSEACEPYQDEEGRLLHRSLAEHVVKRIEGQPATVTAYNDKRDSEPAPLPFSLSALQIE 300
            PSEAC+PY D+EGR+L + LA++VV+RI  +PA VT  + K   + APLP+SLSALQI+
Sbjct: 241 QPSEACQPYMDDEGRVLSKGLAQNVVRRITDKPAKVTQLSTKDKQQSAPLPYSLSALQID 300

Query: 301 AAKRFGFSAQNVLDICQKLYETHKLITYPRSDSRYLPEEHFAGRHAVLNAISVHAADLLP 360
           AAKRFG SA+ VLD CQ LYE HKLITYPRSDSRYLP E      +VLNAI+  A +L+ 
Sbjct: 301 AAKRFGMSAKEVLDTCQSLYERHKLITYPRSDSRYLPTEQHGLASSVLNAITSGAPELVA 360

Query: 361 -QPVVDPEIRNRCWDDKKVDAHHAIIPTARSSQV-KLSDNEEKVYGLIARQYLMQFCPDA 418
                +P ++++ WDDKKVDAHHAIIPT +   +  LS  E ++Y  IARQYL QF P  
Sbjct: 361 HSEAPNPRLKSKAWDDKKVDAHHAIIPTEKQPNLGSLSQRERQLYLHIARQYLAQFYPAY 420

Query: 419 VFRKCQIDLDIANGKFVAKARFLAEAGWRTLLG------------------NKERDEEND 460
            + +  +++ I  G F  KAR     GW+ L                    +K++DE   
Sbjct: 421 CYSETAVEVTIEGGLFKTKARQDKSLGWKQLFAREEGERKDTSNTETFAQDDKDKDEGEY 480

Query: 461 GMPLPVVAKDDELLCEKGEVVERQTQPPRHFTDATLLSAMTGIARFVQDKDLKKILRATD 520
              LP +     L C +GE+VE+QTQPP+ FTDATLL AMTGI R+V D +++KIL+ TD
Sbjct: 481 AGQLPPLILGQVLHCNQGELVEKQTQPPKAFTDATLLGAMTGINRYVTDPEIRKILKETD 540

Query: 521 GLGTEATRAGIIELLFKRGFLTKKGRYIHSTDAGKALFHSLPEMATRPDMTAHWESILTQ 580
           GLGTEATRAGIIELLFKRGF+ ++G+ I +T+ GK L +SLP  AT PDMTA WE+ L  
Sbjct: 541 GLGTEATRAGIIELLFKRGFIQRQGKSIVATEVGKGLINSLPLSATTPDMTALWEASLNG 600

Query: 581 ISEKQCRYQDFMQPLVGTLFQLIDQARSTPVRRFRGIVAPGDGKKSFSKGKGRAKAKDKK 640
           I  K   YQ FMQPL+GTL  LI  A +       G+   G  K++ +K  G  KA  + 
Sbjct: 601 ICHKDISYQGFMQPLLGTLHSLIQNAGAQLPSALNGLKGQG-FKRAATKKSGYRKAGVRG 659

Query: 641 SASGPAA 647
           +A G  A
Sbjct: 660 AAGGKKA 666