Pairwise Alignments

Query, 651 a.a., DNA topoisomerase III from Klebsiella michiganensis M5al

Subject, 862 a.a., DNA topoisomerase III (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  210 bits (534), Expect = 2e-58
 Identities = 149/430 (34%), Positives = 224/430 (52%), Gaps = 40/430 (9%)

Query: 217 VAKDFFDVKAHIVTPK----DERFVATWVPSEACEPYQDEEGRLLHRSLAEHVVKRIEGQ 272
           VA D  D  A I  P+    D+RF   W       P    E R+     A+ +     G+
Sbjct: 305 VASDVPD--AEIAAPEAAANDDRFRGVWH-----RPPDRRETRVDSGEEADAIATACTGK 357

Query: 273 PATVTAYNDKRDSEPAPLPFSLSALQIEAAKRFGFSAQNVLDICQKLYETHKLITYPRSD 332
              V +   +  ++  PLPF L+ LQ EA  RFG+SA++ L   Q LYET KLITYPR+D
Sbjct: 358 LGIVESVQGRAGTQQPPLPFDLTTLQREANTRFGYSAKDTLTHAQSLYETRKLITYPRTD 417

Query: 333 SRYLPEEHFAGRHAVLNAI-SVHAADLLPQP-------VVDPEIRNRCWDDKKVDAHHAI 384
           SR+L +E F     +LN + +VH   L P+        +   + R  C DD+KV  HHAI
Sbjct: 418 SRHLTKELFG---EILNHLRAVH--HLYPEETMLAVGRIKSGKARFACVDDRKVTDHHAI 472

Query: 385 IPTARSSQV-KLSDNEEKVYGLIARQYLMQFCPDAVFRKCQIDLDIANGKFVAKARFLAE 443
           IPTAR   + +LS  E  +Y ++ R+ +  FCP+A F    + + +    F+AK +   +
Sbjct: 473 IPTARKGNLTQLSAPERNIYDMVCRRTIAAFCPEAKFSTSTVTVMVGEHPFIAKGKVFKD 532

Query: 444 AGWRTLLGNKERDEENDGMPLPVVAKDDELLCEKGEVVERQTQPPRHFTDATLLSAMTGI 503
            GW  +    E     +  PLP + K  +LL      V+RQT+ P HFTDA+LL+AM   
Sbjct: 533 KGWMVV----EPWRTAEDTPLPQLRKGSKLLTLDVGPVKRQTKAPAHFTDASLLAAMETA 588

Query: 504 ARFVQDKDLKKILRATDGLGTEATRAGIIELLFKRGFLTKKGRYIHSTDAGKALFHS--- 560
            R V+D  L++ ++   GLGT ATRA +IE L  RG++ K+G+ + +TD G  +  +   
Sbjct: 589 GRLVEDDALRQAMKER-GLGTPATRAQVIETLVARGYVAKQGKKLVATDRGMQVAETVTT 647

Query: 561 -LPEMATRPDMTAHWESILTQISEKQCRYQDFMQPLVGTLFQLIDQARSTPVR-RFRGIV 618
            LP++A+ P++T  WE  L  I      Y  FM+ +  +++  + + R+  +R   R I 
Sbjct: 648 LLPDVAS-PELTGQWEKRLKDIEAGADSYPAFMRSIRESVWHGVHRIRNRDIRPLLRDIA 706

Query: 619 A----PGDGK 624
           A    P DG+
Sbjct: 707 ARNSRPPDGR 716



 Score =  139 bits (351), Expect = 4e-37
 Identities = 87/227 (38%), Positives = 138/227 (60%), Gaps = 14/227 (6%)

Query: 3   LFIAEKPSLGRAIAEVLPKPHRKGDGYIECGNGQVVTWCIGHLLEQAQPDVYDARYA-RW 61
           L IAEKPS+ R IA ++    R+  GY+E G   +V+W +GHL+  A+P+  D  +A RW
Sbjct: 5   LIIAEKPSVAREIAPLVGAQGRRA-GYLE-GPDHLVSWAVGHLVGIAEPEEQDEAWAGRW 62

Query: 62  NLLDLPIVPEKWQLQPKPSVTKQLNVIKRLLGDAQE--VIHAGDPDREGQLLVDEVLDYL 119
            L  LP++P ++QL+  P    Q +V++RLL D +   +++A D  REG+L+   +  YL
Sbjct: 63  TLEQLPMLPPRFQLRVLPETADQFSVLQRLLLDDRVTGIVNATDAGREGELIFRRI--YL 120

Query: 120 QLAPEKRQQVQRCLINDLNPQAVERAINRLRANSEFVPLCVSALARARADWLYGINMTRA 179
               +K   V+R   +D+  + + +++ RL  + E   L ++A ARA ADWL G+N +R 
Sbjct: 121 VAGCDK--PVRRLWASDMTEEGLRKSLARLLPDEEKRNLGLAAFARAEADWLVGMNFSRL 178

Query: 180 YTILGRNAGYQGVLSVGRVQTPVLGLVVRRDEEIENFVAKDFFDVKA 226
           +T+        G++SVGRVQTPVL L+  R  +IE+F  +DF+ V+A
Sbjct: 179 FTVKSG-----GLVSVGRVQTPVLCLLADRRRDIEHFTPQDFWTVEA 220