Pairwise Alignments

Query, 592 a.a., multidrug ABC transporter permease/ATP-binding protein from Klebsiella michiganensis M5al

Subject, 601 a.a., ABC transporter, ATP-binding protein MsbA (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  243 bits (621), Expect = 1e-68
 Identities = 170/592 (28%), Positives = 296/592 (50%), Gaps = 23/592 (3%)

Query: 6   ELWPTLKRLLAYGSPWRKPLMIAVAIMWVAAVAEVSGPLLISYFIDNMVAKNS------- 58
           E+W   KRL+ Y  P +   +++V  + V  + + +    I  FID   + ++       
Sbjct: 8   EMWTVFKRLMGYLKPMKGMFLLSVVGLIVYGLVDAAFISFIGPFIDKGFSSSAPAISNGI 67

Query: 59  -LPL--------KLVCGLAVAYIGLQLLAAGLHYCQALLFNRAAVGVVQQLRSDVMDAAL 109
            LP         +++    +  I +  L    ++      +  +  ++  +R  V +  L
Sbjct: 68  ALPTSQGFHADNQVLLMAPIVVILMFSLRGFANFVSTYGISYMSARLIMDMRQQVFEHYL 127

Query: 110 RQPLSEFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMAL 169
             P+S  D +  G LIS+VT DTE I     + + +++R +  I  ML  MF   W+++L
Sbjct: 128 SLPVSYMDKENTGNLISKVTFDTEQIARASGSALISIVRDSVTIIGMLGLMFYNSWKLSL 187

Query: 170 VAIAIFPAVLIVMMIYQRYSTPIVRRVRAWLADINDGFNEVINGMGVIQQFRQQARFGER 229
             + I P + +V+ I  R    + ++++  + D++    ++I G   +  F  Q     R
Sbjct: 188 CILVIGPIMGVVITIVSRRFRKVSKQIQTAMGDVSAATEQMIKGHKNVLAFGGQETETAR 247

Query: 230 MREASYAHYLARMQTLRLDGFLLRPLLSLFSSLILCGLLMLFGFSS-SGTIEVGVLYAFI 288
             + +  +    M+ L +   + +PL+ +  S  L  +L      S    +  G     +
Sbjct: 248 FAKINDRNRHQNMK-LAVAQAVSQPLIMVIGSFALAFVLYAASLDSMKADLTAGTFATIL 306

Query: 289 SYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDK-PRQAWGEDSEPLRSGAISIDHLS 347
             +  + +P+  LT   +  Q+ + A   VFEL+D  P    G  +     G +  D++S
Sbjct: 307 GAMMAMLQPIKNLTRVNAEFQRGIAACTTVFELLDTVPESDTGTYTVARAKGNLRFDNVS 366

Query: 348 FAYR-DDSLVLQDINLDIPSRSFVALVGHTGSGKSTLASLMMGYYP-LTQGEIRIDGRPL 405
           F+Y   +   L+ I+ ++     +ALVG +GSGKST+ASL+  +Y  L  G+I +D   +
Sbjct: 367 FSYEGQERRALEKIDFEVSQGQTLALVGRSGSGKSTIASLVTRFYTGLESGDILLDDVSI 426

Query: 406 SSLSHSALRQGIAMVQQDPVVLADTFYANVTLGR--DISEEQVWEALEAVQLADLAREME 463
              S  +LR  +A+V Q   +  DT   N+      +++ EQ+ EA       +   ++ 
Sbjct: 427 YDYSLKSLRSQVALVSQQVTLFNDTIANNIAYAYPGEVTREQIIEAATLAHAMEFIEQLP 486

Query: 464 NGIYTQLGEQGNNLSVGQKQLLALARVLVDTPQVLILDEATANIDSGTEQAIQQALARVR 523
           +G+ TQ+GE G  LS GQ+Q +A+AR ++    VLILDEAT+ +D+ +E+AIQQ L  +R
Sbjct: 487 DGLDTQVGENGVLLSGGQRQRIAIARAMLRDAPVLILDEATSALDTESEKAIQQGLDNLR 546

Query: 524 EHTTLVVIAHRLSTIVEADTILVLHRGQAVERGNHQQLLAAKGRYWQMYQLQ 575
           ++ T VVIAHRLSTI  AD ILV+ +G+ VERG H+ LL   G Y ++YQ+Q
Sbjct: 547 QNRTSVVIAHRLSTIESADQILVVDQGRIVERGTHKSLLELGGMYAKLYQMQ 598