Pairwise Alignments

Query, 785 a.a., DNA polymerase II from Klebsiella michiganensis M5al

Subject, 808 a.a., DNA polymerase II (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  605 bits (1560), Expect = e-177
 Identities = 350/817 (42%), Positives = 484/817 (59%), Gaps = 51/817 (6%)

Query: 9   LLTRHWRDTPQGTELTFWLATDDGPLEVTLPPQESVAFIAESQRPQVERLLQGENGHRLA 68
           +LTRH         L ++LAT+ GP+ + LP  E + F  ++    ++    G    R  
Sbjct: 1   MLTRHAIARDGNLLLQYYLATESGPVLMELPDTEYICFCHQTDIQALQLQTPGL-ALRFV 59

Query: 69  ALNLQDFHRQPVFGLYCRAHRQLMRLEKKLRENGVTVYEGDIRPPERYLMERFITAPVWV 128
            L L+ F RQ V G+Y ++      L++   + G+ ++E DIRP +R+L+ERF+   V  
Sbjct: 60  PLELKSFKRQAVAGIYAKSSSAFRSLQRIANDAGIPLFEADIRPEQRFLIERFVALDVAF 119

Query: 129 EG-------------------------EARGQQLVNARMKPN---PHYRPPLKWVSLDIE 160
            G                          ++G   V   M+     P     L+ +SLD E
Sbjct: 120 LGHYANKIANNIKCDNDSAIQAINKSENSQGHLSVFTAMRAKAIAPQPTIKLRSISLDFE 179

Query: 161 TSRHGELYCIGLEGCGQRV-----VYMLGPEPATPPAVDFTLEYVASRPLLLEKLNAWFA 215
            S  G LY + L G   +      V M+G   +  P     +E+V+   +L+ +L AWFA
Sbjct: 180 CSFDGLLYSVALYGRDAQAQPYEKVIMVGEVQSDAPQY---IEWVSDEAMLIRRLIAWFA 236

Query: 216 AHDPDVLIGWNVVQFDLRVLQKHAERYRIPLMLGRGNSELEWR-EHGFKNGVFFAQANGR 274
             DPDV+IGW+VV FDL +L + A  +RIPL LGRG + LEW+ ++ F+         GR
Sbjct: 237 EFDPDVIIGWSVVTFDLALLYRRALLHRIPLRLGRGGALLEWKVDNKFRPETL--NLPGR 294

Query: 275 LIIDGIEALKSAFWNFSSFALESVARELLGEGKAIDNPWDRMDEIDRRFHHDKPALATYN 334
           +++DGI+ LK+AF++F  F+LE VA+ LLGEGKAI +  +R+ EID  F  DK +LA YN
Sbjct: 295 VVLDGIDWLKAAFYHFERFSLEFVAQALLGEGKAIHDVENRVQEIDALFTEDKQSLAHYN 354

Query: 335 LQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLG 394
           L D  LV  IF  T++  F L RA + GL   R G SVAAF+HLY P +HR GYVAP   
Sbjct: 355 LTDSRLVWDIFEHTQLWDFALARAELTGLELGRVGASVAAFNHLYLPHLHRAGYVAPAEP 414

Query: 395 AVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGLAHP----DDA 450
           A     SPGGYVMDS PG Y  +LV D+KSLYPSIIRTFLIDP GL+EGL       D++
Sbjct: 415 ASQGIESPGGYVMDSVPGFYQHILVFDFKSLYPSIIRTFLIDPKGLIEGLGDDSLVLDES 474

Query: 451 HSTEGFLGARFSREKHCLPGIVGQIWHGRDEAKQHKNKPLSQALKIIMNAFYGVLGTSAC 510
            +  GFLGARFSR +  LP ++  +   R++AK+  N PLSQA+KIIMN+ YGVLG+  C
Sbjct: 475 ETVTGFLGARFSRRQPILPKLIQTLSEQREKAKREANAPLSQAIKIIMNSLYGVLGSQGC 534

Query: 511 RFFDPRLASSITMRGHAIMRQTKALIESQGYDVIYGDTDSTFVWLKRAHSDEEASSIGRS 570
            F D +LASSITMRGH IM+QT+A IE  GY VIYGDTDSTFV L       + S++G+ 
Sbjct: 535 VFHDAKLASSITMRGHQIMKQTRAWIEEMGYQVIYGDTDSTFVHLGYEPDLSDISALGKQ 594

Query: 571 LVAFVNEWWAAELAKD-GLASTLELEFETHFCRFLMPTIRGADTGSKKRYAGMIQE-ADE 628
           + A +N  W A++ KD  L S LEL+FE H+ +F MPT+RG++ GSKKRY G  +  + E
Sbjct: 595 IAAQINANWQAKITKDFELESFLELQFERHYEQFFMPTLRGSEEGSKKRYVGAWRNVSGE 654

Query: 629 QRMVFKGLETVRTDWTPLAQQFQQELYLRIFRHQPYRDYVRETIDKLMNGELDDRLVYRK 688
             + FKG+E VR+DW+PLA++ Q ELY R+F  +    Y+ + I +L  G+ DD L++ K
Sbjct: 655 LEITFKGMEQVRSDWSPLARKVQAELYERMFNQRDISGYLADVIGELQAGKRDDELIFSK 714

Query: 689 RLRRPLAEYQRNVPPHVRAARLADEQNVRLGRPQQYQQRGS-IKYVWTTGGPEPVDYQQS 747
           R+RR L EY     PHV+ AR    Q   L     Y +RG+ I YV T  GPEPV ++ S
Sbjct: 715 RMRRNLEEYTAKSSPHVKVAR----QLCELTGKASYSKRGAQIDYVITVNGPEPVSHRSS 770

Query: 748 PLDYEHYLSKQLEPVAEGILPFVDDDFATIVTGQLGL 784
            +DY++Y+ KQ+ P+AE +   +  ++  I + QL L
Sbjct: 771 TIDYQYYIDKQIGPIAEPVFSIMKLNYTNIASKQLSL 807