Pairwise Alignments

Query, 968 a.a., RNA polymerase-associated protein RapA from Klebsiella michiganensis M5al

Subject, 427 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 47.0 bits (110), Expect = 3e-09
 Identities = 43/147 (29%), Positives = 65/147 (44%), Gaps = 12/147 (8%)

Query: 494 LMGHLTS-HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAE 552
           L+ HL   H+  + L+  +   T   L Q L +R GI A VFH   +   R R    F  
Sbjct: 243 LLAHLIKQHQWSQALIFVSAKNTCNHLAQKLSKR-GISAEVFHGDKAQGARTRVLDGFKN 301

Query: 553 EDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQA--------H 604
            +    VL+ ++I + G +      ++ FDLP +P     RIGR  R G+A        H
Sbjct: 302 GEIS--VLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISH 359

Query: 605 DIQIHVPYLERTAQSVLVRWYHEGLDA 631
           +   H   +E+  +  LVR    G +A
Sbjct: 360 EEYHHFGVIEKKNKIKLVREQIPGFEA 386