Pairwise Alignments

Query, 968 a.a., RNA polymerase-associated protein RapA from Klebsiella michiganensis M5al

Subject, 968 a.a., RNA polymerase-associated protein HepA (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 1147 bits (2966), Expect = 0.0
 Identities = 565/970 (58%), Positives = 745/970 (76%), Gaps = 6/970 (0%)

Query: 1   MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYARNDSPITRVMFNPGDT 60
           MPF LGQRWISDTESELGLGTVV ++ RMVT+LFPA GENR+++RN++P+TRV++NPGDT
Sbjct: 1   MPFALGQRWISDTESELGLGTVVQVEGRMVTVLFPATGENRMFSRNEAPLTRVIYNPGDT 60

Query: 61  ITSHEGWQLQVDEVNEENGLLAYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQI 120
           + SHEGW L V+E+ E++ L+ Y G   +T E  V+LRE LL+  + F+KPQDRLFAGQI
Sbjct: 61  VESHEGWSLSVEELTEKDDLVVYHGIHSETGE-KVSLRETLLNHNIRFNKPQDRLFAGQI 119

Query: 121 DRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVG 180
           DR+DRF +RY+ +  + +       GL+G R  LIPHQ+ IAH+VGRR+APRVLLADEVG
Sbjct: 120 DRLDRFGIRYQCQLLRHQLATSDLLGLQGPRVGLIPHQMWIAHEVGRRYAPRVLLADEVG 179

Query: 181 LGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQH 240
           LGKTIEAG+I+HQQLL+  AERVLI+VP+TL+HQWLVEMLRRFNLRFS+FD++R  EA  
Sbjct: 180 LGKTIEAGLIIHQQLLTCRAERVLIIVPDTLRHQWLVEMLRRFNLRFSVFDEDRCVEAFA 239

Query: 241 DAINPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEDAPSREYQAIE 300
           D  NPF TEQLVICSL+ +R+ K+RL+   DA+WDL+VVDEAHHL W+E+APSR YQ +E
Sbjct: 240 DHDNPFYTEQLVICSLELLRK-KKRLDQALDADWDLLVVDEAHHLEWTEEAPSRAYQVVE 298

Query: 301 QLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQQNYRPVADAVALLL 360
            L+E VPG+LLLTATP+QLG ESHFARLRLLDP+RF+D+  F+ E+ +Y+ VA A   L 
Sbjct: 299 ALSEVVPGVLLLTATPDQLGHESHFARLRLLDPDRFYDYDAFLAEENSYKDVAIAAEALA 358

Query: 361 AGNKLNDAELNALSDLIGEQDIEP---LLQAANSDRDDAQAARQELVSMLMDRHGTSRVL 417
             +KL+D  +N+L++L+ E+DI P   L+QA   D +  QAAR EL+  L+DRHGT RVL
Sbjct: 359 GESKLSDYAINSLTELLSEKDIAPSIRLIQAEGIDSELQQAARSELLQELLDRHGTGRVL 418

Query: 418 FRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEF 477
           +RN+R  VKGFPKR  +     +P QY TA +V+ +MG RK+ E +A   L PE++YQEF
Sbjct: 419 YRNSRASVKGFPKRIFNAYPHAMPEQYLTAARVNDMMGGRKSLEAKAAQALSPEKLYQEF 478

Query: 478 EGDTGTWWNFDPRVEWLMGHLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEG 537
           E ++ +WW FDPRV+WL+  L SHRS+KVL+I + A TAL LE+ LR REGI+A VFHEG
Sbjct: 479 EDNSASWWKFDPRVDWLIEFLKSHRSKKVLIIASGADTALSLEEALRTREGIQATVFHEG 538

Query: 538 MSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRL 597
           MSIIERD+A A+FA+E+ GAQ L+CSEIGSEGRNFQFAS+LV+FDLP NPDLLEQRIGRL
Sbjct: 539 MSIIERDKAGAYFAQEEGGAQALICSEIGSEGRNFQFASHLVLFDLPLNPDLLEQRIGRL 598

Query: 598 DRIGQAHDIQIHVPYLERTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHNELINYLAAP 657
           DRIGQ +DIQIH+PYL+ TAQ  L++WYH+GL+AFE TCP G  ++     EL+N L   
Sbjct: 599 DRIGQKNDIQIHLPYLQDTAQERLLQWYHQGLNAFELTCPGGHILFSEFAEELLNVLVGG 658

Query: 658 ENTDGFDELIKACRQQHDALKAQLEQGRDRLLEIHSNGGEKAQQLAESIEEQDDDTSLIA 717
           +  D    L+   + ++  LK  +EQGRD+LLEI+S+GG+KA+ + E + + D DT LI 
Sbjct: 659 DE-DELTNLLNHTQSRYKELKHAMEQGRDKLLEINSHGGDKAKAIVERLAQSDQDTKLIG 717

Query: 718 FSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFI 777
             + L+DI+G++Q+D+GEN I+L PS+HM+ P +PGL EDG T+TF+RD ALSR+D   I
Sbjct: 718 SVIRLWDIIGVDQEDKGENSIILRPSEHMMFPTYPGLHEDGVTVTFDRDTALSRDDIALI 777

Query: 778 TWEHPLIINGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKHLQLNRFLP 837
           T EHPL+  GLDLI   DTG++++++LKNKALP GTL LELIY+ +A APK  QL R+LP
Sbjct: 778 TQEHPLVQTGLDLITGSDTGTTSVAILKNKALPAGTLFLELIYMADASAPKSSQLYRYLP 837

Query: 838 PTPVRMLLDKNGNNLAGQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEGQVAK 897
           PTP+R+LLDKNGN+L+ +V++ SF++QLSAVNRH GSKLV A Q  +H +  +GE     
Sbjct: 838 PTPIRILLDKNGNDLSAKVDYTSFDKQLSAVNRHIGSKLVTASQPILHPLFAKGEEYAQV 897

Query: 898 AAQALIDAARKEADDKLTAELSRLEALRAVNPNIRDDELAAIESNRQQVMDALAQAGWRL 957
           A   L+  AR++   +LT EL RLE+L+AVNPNIR++EL  + +  Q++   L  +  +L
Sbjct: 898 AVNELVAQAREKMTSQLTGELERLESLKAVNPNIREEELEYLRNQMQELTTYLDASQLQL 957

Query: 958 DALRLIVVTH 967
           DA+R+++V+H
Sbjct: 958 DAIRMVLVSH 967