Pairwise Alignments

Query, 420 a.a., site-specific recombinase, phage integrase family protein from Klebsiella michiganensis M5al

Subject, 415 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  265 bits (677), Expect = 2e-75
 Identities = 147/403 (36%), Positives = 219/403 (54%), Gaps = 21/403 (5%)

Query: 3   LNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVT 62
           L+  +++TAKPKDK Y +ADGGGL + +   GSK W + Y  P  KK   L+ G +P ++
Sbjct: 8   LSDTEIKTAKPKDKEYNLADGGGLQIRIKPNGSKLWLLNYSHPITKKRQNLSLGTYPDIS 67

Query: 63  LAQARAKRDEAKKLLVQGIDPKAEQKEAQAENSGA---YTFETIAREWHASNK-RWSEDH 118
           L  AR    EA+ LL  G DPKA  +EAQ     A   +TF  IA EW    K   +EDH
Sbjct: 68  LLSARKLAQEARTLLAHGTDPKAH-REAQIAAKAAIIEHTFGKIAAEWFERKKDEVTEDH 126

Query: 119 RSRVLRYLELYIFPYIGTSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAV 178
            +   R  +L++ P +    I Q+    ++  ++ ++A G  +  +RL QR+  +M YAV
Sbjct: 127 AAATWRSFKLHLLPSLKDIPISQITAPMVIEFLRPIEAKGNLETVKRLTQRLNEVMIYAV 186

Query: 179 QNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTF 238
               I +NP S +       +  H  AL     PE +  +A    + +TR  +E  L T 
Sbjct: 187 NTGLIHANPLSGIKAIFKKPRKEHLAALKPDELPELMQAIANASIKKVTRFLIEWQLHTM 246

Query: 239 VRSSELRFARWEEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMILLAQ 298
            R +E   ARW+E +FD+ +W +PA R            MKM+ +H +PL+ Q + LLA 
Sbjct: 247 TRPNEAAAARWDEINFDERIWLIPAAR------------MKMRRDHQIPLTEQTLALLAA 294

Query: 299 LKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGL 358
           +K ISG +E +FP D D     +  T N+AL+ MG   +T    HGFR++A   L E G 
Sbjct: 295 IKPISGHREYIFPADRDPKTHSNVQTANAALKRMGLKDRT--TAHGFRSLASTTLNEQG- 351

Query: 359 WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYL 401
           +  D IE  L+H+++N VR+AY + S +LD RR M+ WW++Y+
Sbjct: 352 FDPDVIEAALAHTDKNQVRSAY-NRSIYLDRRREMMTWWSNYI 393